RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TPP1O14773 563 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TADA2AO75478 443 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 RPS12P25398 132 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 ZNF135P52742 658 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 AQP4P55087 323 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 LAMTOR4Q0VGL1 99 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 IFRD2Q12894 506 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 ART3Q13508 389 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ADGRE1Q14246 886 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PCLAFQ15004 111 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ARMC3Q5W041 872 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 EPGNQ6UW88 154 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 UGT2A3Q6UWM9 527 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 METTL7BQ6UX53 244 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PLPPR4Q7Z2D5 763 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ADGRF2Q8IZF7 708 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CNTD1Q8N815 330 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 HTR3CQ8WXA8 447 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ZBED3Q96IU2 234 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 MPP4Q96JB8 637 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PPP1R2P1Q96PQ5 205 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 SNRNP25Q9BV90 132 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 NUF2Q9BZD4 464 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 C10orf88Q9H8K7 445 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 GBA2Q9HCG7 927 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 RAP2CQ9Y3L5 183 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TRPC5OSA6NMA1 111 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 MEI4A8MW99 385 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 NCAM2O15394 837 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 COL6A2P12110 1019 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ME2P23368 584 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PEX2P28328 305 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TNFSF9P41273 254 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 DCTN2Q13561 401 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 UGP2Q16851 508 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 FAM187BQ17R55 369 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 SFT2D3Q587I9 215 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 IRAK1BP1Q5VVH5 260 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 SEL1L3Q68CR1 1132 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 FAM183BPQ6ZVS7 135 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 KRT27Q7Z3Y8 459 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 KIAA0319LQ8IZA0 1049 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 LRRC43Q8N309 656 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CPSF7Q8N684 471 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 RNF149Q8NC42 400 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PRICKLE1Q96MT3 831 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 DDX50Q9BQ39 737 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 EBF4Q9BQW3 602 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 FZD8Q9H461 694 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PDZD7Q9H5P4 517 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CYP4F11Q9HBI6 524 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 BFARQ9NZS9 450 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PGAP2Q9UHJ9 254 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 GTF2IRD1Q9UHL9 959 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 INPP5FQ9Y2H2 1132 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 KIAA1217Q5T5P2 1943 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PHIPQ8WWQ0 1821 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 GPR25O00155 361 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 HDAC3O15379 428 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PFDN1O60925 122 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 AVILO75366 819 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 USP1O94782 785 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SRGAP2CP0DJJ0 459 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SRGAP2BP0DMP2 458 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PMLP29590 882 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PPARGP37231 505 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 RANBP1P43487 201 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 NUMBP49757 651 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 AIF1P55008 147 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ESRRGP62508 458 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 MMRN1Q13201 1228 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SNAPC2Q13487 334 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PDE1CQ14123 709 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 TMEM132DQ14C87 1099 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 USP41Q3LFD5 358 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ITPRIPL1Q6GPH6 555 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 DENND5BQ6ZUT9 1274 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 STRADAQ7RTN6 431 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 UNC93AQ86WB7 457 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SLC25A41Q8N5S1 370 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PQLC3Q8N755 202 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PHC3Q8NDX5 983 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 REPS2Q8NFH8 660 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PCDH19Q8TAB3 1148 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PDCD6IPQ8WUM4 868 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 CCDC124Q96CT7 223 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 HPDLQ96IR7 371 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PEBP4Q96S96 227 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 UTP6Q9NYH9 597 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 TLK1Q9UKI8 766 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CDYLQ9Y232 598 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 DERAQ9Y315 318 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 INO80B-WBP1J3KQ70 363 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CYB561D2O14569 222 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CLASP2O75122 1294 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 RGS20O76081 388 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 FAM200BP0CF97 657 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 HSPA8P11142 646 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 PSMC3P17980 439 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TTKP33981 857 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms