RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 KDM4CQ9H3R0 1056 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 TLR8Q9NR97 1041 aaKnown RBP11.47□□□□□ -0.57
PTPRF-204ENST00000412568 LTBP4Q8N2S1 1624 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 PRR23AA6NEV1 266 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 CYP1A1P04798 512 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-204ENST00000412568 NQO1P15559 274 aaKnown RBP11.47□□□□□ -0.57
PTPRF-204ENST00000412568 RANBP1P43487 201 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 ACAP1Q15027 740 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 QPCTQ16769 361 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 FSCBQ5H9T9 825 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 DCAF12L1Q5VU92 463 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 KRT80Q6KB66 452 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 MTDHQ86UE4 582 aaKnown RBP11.47□□□□□ -0.57
PTPRF-204ENST00000412568 IFNEQ86WN2 208 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 IFNL1Q8IU54 200 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 TMEM86AQ8N2M4 240 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 APOL5Q9BWW9 433 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 DUSP16Q9BY84 665 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 ENTPD7Q9NQZ7 604 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 STXBP5LQ9Y2K9 1186 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 CCDC88AQ3V6T2 1871 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 MYO7AQ13402 2215 aa11.47□□□□□ -0.57
PTPRF-204ENST00000412568 PAPSS1O43252 624 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 RHOCP08134 193 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 PLK1P53350 603 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 DUSP4Q13115 394 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 EFTUD2Q15029 972 aaKnown RBP eCLIP11.46□□□□□ -0.572e-6■■■■□ 21.5
PTPRF-204ENST00000412568 SKIV2LQ15477 1246 aaKnown RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SLC45A4Q5BKX6 768 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SGO1Q5FBB7 561 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SPDYCQ5MJ68 293 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 CACUL1Q86Y37 369 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 BORCS6Q96GS4 357 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 RUVBL2Q9Y230 463 aaKnown RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 ADGRA2Q96PE1 1338 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 TTC36A6NLP5 189 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 H7C4K7 107 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SOAT2O75908 522 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SUPT7LO94864 414 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 GRK4P32298 578 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 RPA3P35244 121 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 GEMP55040 296 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 CSHL1Q14406 222 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 TPGS1Q6ZTW0 290 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 ZNF572Q7Z3I7 529 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 ARHGAP18Q8N392 663 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 FBXO44Q9H4M3 255 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 SUN2Q9UH99 717 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 CDH9Q9ULB4 789 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 MTO1Q9Y2Z2 717 aaKnown RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 AAR2Q9Y312 384 aaKnown RBP11.46□□□□□ -0.57
PTPRF-204ENST00000412568 MYH7P12883 1935 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 CHD4Q14839 1912 aa11.46□□□□□ -0.57
PTPRF-204ENST00000412568 PHGDHO43175 533 aaKnown RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 RHOBTB1O94844 696 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 LMNAP02545 664 aaKnown RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 OXCT1P55809 520 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 PLIN5Q00G26 463 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 PTRHD1Q6GMV3 140 aaKnown RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 RGS9BPQ6ZS82 235 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 LMO3Q8TAP4 145 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 TMA16Q96EY4 203 aaKnown RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 ZBED3Q96IU2 234 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 CENPKQ9BS16 269 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 LHX5Q9H2C1 402 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 IRAK4Q9NWZ3 460 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 MYH11P35749 1972 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 A0A1W2PPM1 405 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 ARL5CA6NH57 179 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 ASMTLO95671 621 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 DRD4P21917 467 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 OR1D2P34982 312 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 ESRRGP62508 458 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 TUSC3Q13454 348 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 ITGA9Q13797 1035 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 SOWAHAQ2M3V2 549 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 C1orf220Q5T0J3 134 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 LINC00523Q86TU6 105 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 HS6ST3Q8IZP7 471 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 TRIML2Q8N7C3 387 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 PHF21BQ96EK2 531 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 PCED1BQ96HM7 432 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 DDX50Q9BQ39 737 aaKnown RBP11.46□□□□□ -0.58
PTPRF-204ENST00000412568 CIPCQ9C0C6 399 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 IL1RL2Q9HB29 575 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 SLCO1B3Q9NPD5 702 aa11.46□□□□□ -0.58
PTPRF-204ENST00000412568 SUPT3HB4E1H0 165 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SEPT4O43236 478 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SNX3O60493 162 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SUPT3HO75486 399 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 ITGB6P18564 788 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 NFKB1P19838 968 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 PTPN7P35236 360 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 CDKN2BP42772 138 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 MGAT5Q09328 741 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 RBBP7Q16576 425 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 IMPG1Q17R60 797 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 DBF4BQ8NFT6 615 aa11.45□□□□□ -0.58
PTPRF-204ENST00000412568 SPDYE1Q8NFV5 336 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms