RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NEU2Q9Y3R4 380 aa27.68■■■□□ 2.02
MSX1-201ENST00000382723 EPOPA6NHQ4 379 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 E9PAM4 449 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 ETS1P14921 441 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 TNFRSF8P28908 595 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 RPL21P46778 160 aaKnown RBP27.67■■■□□ 2.02
MSX1-201ENST00000382723 MS4A13Q5J8X5 152 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 UNC45BQ8IWX7 931 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 SEC14L1Q92503 715 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 ZSCAN5DPP0CG00 497 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 IRF1P10914 325 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 GDF10P55107 478 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 CUL1Q13616 776 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 ZNF697Q5TEC3 545 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 NUGGCQ68CJ6 796 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 MRPS31Q92665 395 aaKnown RBP27.67■■■□□ 2.02
MSX1-201ENST00000382723 TBC1D31Q96DN5 1066 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 C1orf74Q96LT6 269 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 SLC22A12Q96S37 553 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 ATXN3LQ9H3M9 355 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 FAM114A2Q9NRY5 505 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 SMPD4Q9NXE4 827 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 VANGL2Q9ULK5 521 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 NEU3Q9UQ49 428 aa27.67■■■□□ 2.02
MSX1-201ENST00000382723 A0A1W2PRU2 124 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 SPDYE4A6NLX3 237 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 SEC31AO94979 1220 aaKnown RBP27.66■■■□□ 2.02
MSX1-201ENST00000382723 MBL2P11226 248 aaPredicted RBP27.66■■■□□ 2.02
MSX1-201ENST00000382723 GJA1P17302 382 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 COG7P83436 770 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 PAFAH1B3Q15102 231 aaKnown RBP27.66■■■□□ 2.02
MSX1-201ENST00000382723 MANEALQ5VSG8 457 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 RAP1GAP2Q684P5 730 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 ARL14EPQ8N8R7 260 aaPredicted RBP27.66■■■□□ 2.02
MSX1-201ENST00000382723 FAM71DQ8N9W8 422 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 HCFC2Q9Y5Z7 792 aa27.66■■■□□ 2.02
MSX1-201ENST00000382723 ADCY8P40145 1251 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 TDHQ8IZJ6 230 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 GCNAQ96QF7 691 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 TLE6Q9H808 572 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 NRG2O14511 850 aaPredicted RBP27.65■■■□□ 2.02
MSX1-201ENST00000382723 HARS2P49590 506 aaKnown RBP27.65■■■□□ 2.02
MSX1-201ENST00000382723 AUHQ13825 339 aaKnown RBP27.65■■■□□ 2.02
MSX1-201ENST00000382723 TP53INP2Q8IXH6 220 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 CCDC89Q8N998 374 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 KLF16Q9BXK1 252 aaPredicted RBP27.65■■■□□ 2.02
MSX1-201ENST00000382723 ARFGAP3Q9NP61 516 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 MPP6Q9NZW5 540 aa27.65■■■□□ 2.02
MSX1-201ENST00000382723 GOLGA6L7A0A1B0GV03 622 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 RFXAPO00287 272 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 C1RP00736 705 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 HDCP19113 662 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 CDC25CP30307 473 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 RBM10P98175 930 aaKnown RBP27.64■■■□□ 2.02
MSX1-201ENST00000382723 FAM182AQ5T1J6 154 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 ARTNQ5T4W7 220 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 BZW1Q7L1Q6 419 aaKnown RBP27.64■■■□□ 2.02
MSX1-201ENST00000382723 RTL10Q7L3V2 364 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 NPWQ8N729 165 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 MAB21L3Q8N8X9 362 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 PLD4Q96BZ4 506 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 GDAP1L1Q96MZ0 367 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 NEUROG2Q9H2A3 272 aa27.64■■■□□ 2.02
MSX1-201ENST00000382723 STC2O76061 302 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 RBL1P28749 1068 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 HTR7P34969 479 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 NRIP1P48552 1158 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 NRLP54845 237 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 NRG1Q02297 640 aaPredicted RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 MAP9Q49MG5 647 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 NADSYN1Q6IA69 706 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 LRRC31Q6UY01 552 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 PDZD4Q76G19 769 aaPredicted RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 CHSY1Q86X52 802 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 CDKL3Q8IVW4 592 aaPredicted RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 HNRNPLLQ8WVV9 542 aaKnown RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 OLFM3Q96PB7 478 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 KCNN4O15554 427 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 ECHS1P30084 290 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 HOXC13P31276 330 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 BMP8BP34820 402 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 DRG2P55039 364 aaKnown RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 XRCC4Q13426 336 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 STXBP5Q5T5C0 1151 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 DENND1CQ8IV53 801 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 LMAN2LQ9H0V9 348 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 CATSPERBQ9H7T0 1116 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 GRHL1Q9NZI5 618 aa27.63■■■□□ 2.01
MSX1-201ENST00000382723 DNMT3BQ9UBC3 853 aaKnown RBP27.63■■■□□ 2.01
MSX1-201ENST00000382723 FGF10O15520 208 aaPredicted RBP27.62■■■□□ 2.01
MSX1-201ENST00000382723 PTPN2P17706 415 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 CORO1AP31146 461 aaKnown RBP27.62■■■□□ 2.01
MSX1-201ENST00000382723 CCR2P41597 374 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 PLTPP55058 493 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 SLC45A4Q5BKX6 768 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 FBXL22Q6P050 247 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 TTC16Q8NEE8 873 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 WBP2Q969T9 261 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 LGMNQ99538 433 aa27.62■■■□□ 2.01
MSX1-201ENST00000382723 MYO7AQ13402 2215 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms