RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ECHDC2Q86YB7 292 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 CCNJLQ8IV13 435 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 FITM2Q8N6M3 262 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 PGAP3Q96FM1 320 aaPredicted RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 RMDN2Q96LZ7 410 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 MFSD11O43934 449 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 AP1G2O75843 785 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 VAV1P15498 845 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 SERPINB9P50453 376 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 RAB27AP51159 221 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 UNC5AQ6ZN44 842 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 PRPF39Q86UA1 669 aaKnown RBP22.18■■□□□ 1.14
TRIM54-202ENST00000380075 CTAGE3PQ8IX95 158 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 PPM1NQ8N819 430 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 NDRG1Q92597 394 aaKnown RBP22.18■■□□□ 1.14
TRIM54-202ENST00000380075 LBHD1Q9BQE6 289 aaPredicted RBP22.18■■□□□ 1.14
TRIM54-202ENST00000380075 MAGEB5Q9BZ81 275 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 MKS1Q9NXB0 559 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 PCDHA11Q9Y5I1 949 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 FAM159BA6NKW6 160 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 CAPN9O14815 690 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 PIAS1O75925 651 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 ATP5HO75947 161 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 KRT38O76015 456 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 ACRP10323 421 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 HCAR3P49019 387 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 NCALDP61601 193 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 FPGSQ05932 587 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 MGAT5Q09328 741 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 DPYSQ14117 519 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 SPDYAQ5MJ70 313 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 SPOCK2Q92563 424 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 SERAC1Q96JX3 654 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 ULBP1Q9BZM6 244 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 ECT2Q9H8V3 914 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 SLCO1B3Q9NPD5 702 aa22.18■■□□□ 1.14
TRIM54-202ENST00000380075 ARL5CA6NH57 179 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 EEF2KO00418 725 aaKnown RBP22.17■■□□□ 1.14
TRIM54-202ENST00000380075 ZNF623O75123 536 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 PARNO95453 639 aaKnown RBP22.17■■□□□ 1.14
TRIM54-202ENST00000380075 CXCL10P02778 98 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 TROVE2P10155 538 aaKnown RBP eCLIP22.17■■□□□ 1.14
TRIM54-202ENST00000380075 CD52P31358 61 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 NDUFV1P49821 464 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 CLCNKBP51801 687 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 RFX8Q6ZV50 586 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 ZNF276Q8N554 614 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 SMARCD1Q96GM5 515 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 PLAC1Q9HBJ0 212 aa22.17■■□□□ 1.14
TRIM54-202ENST00000380075 RANBP2P49792 3224 aaKnown RBP22.17■■□□□ 1.14
TRIM54-202ENST00000380075 MEIS3P2A8K0S8 358 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 GOLGA8RI6L899 631 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 F9P00740 461 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 CNTFP26441 200 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 RFC2P35250 354 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 ADRA1BP35368 520 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 ETV4P43268 484 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 MAGEA10P43363 369 aaPredicted RBP22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PARP6Q2NL67 630 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 SYPL2Q5VXT5 272 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 STEAP4Q687X5 459 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 LRRC8BQ6P9F7 803 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 DENND5BQ6ZUT9 1274 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 C16orf59Q7L2K0 433 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PARP9Q8IXQ6 854 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PCED1BQ96HM7 432 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 SMOQ99835 787 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 NAT9Q9BTE0 207 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 MANSC1Q9H8J5 431 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PIGVQ9NUD9 493 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 SLC17A7Q9P2U7 560 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PADI3Q9ULW8 664 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 MAD1L1Q9Y6D9 718 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 SQORQ9Y6N5 450 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 TRIM49D1C9J1S8 452 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 NCAM2O15394 837 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 MGRN1O60291 552 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 IL1BP01584 269 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PYGBP11216 843 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 CCNFP41002 786 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 PITX1P78337 314 aaPredicted RBP22.16■■□□□ 1.14
TRIM54-202ENST00000380075 NME3Q13232 169 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 TCTN1Q2MV58 587 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 AGMOQ6ZNB7 445 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 OTOAQ7RTW8 1153 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 COLGALT1Q8NBJ5 622 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 DBF4BQ8NFT6 615 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 IRGQQ8WZA9 623 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 P2RY11Q96G91 374 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 LGMNQ99538 433 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 KLF6Q99612 283 aaPredicted RBP22.16■■□□□ 1.14
TRIM54-202ENST00000380075 IQCGQ9H095 443 aaKnown RBP22.16■■□□□ 1.14
TRIM54-202ENST00000380075 BRD8Q9H0E9 1235 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 TXLNGQ9NUQ3 528 aa22.16■■□□□ 1.14
TRIM54-202ENST00000380075 CEP290O15078 2479 aa22.15■■□□□ 1.14
TRIM54-202ENST00000380075 RNF103O00237 685 aa22.15■■□□□ 1.14
TRIM54-202ENST00000380075 COPEO14579 308 aa22.15■■□□□ 1.14
TRIM54-202ENST00000380075 DCLK1O15075 740 aa22.15■■□□□ 1.14
TRIM54-202ENST00000380075 ODC1P11926 461 aa22.15■■□□□ 1.14
TRIM54-202ENST00000380075 CCNB1P14635 433 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms