RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CPXM2Q8N436 756 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 ATP2A3Q93084 1043 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 NCAPGQ9BPX3 1015 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 BRD9Q9H8M2 597 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 TRPV5Q9NQA5 729 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 SLC2A4RGQ9NR83 387 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 TRIM10Q9UDY6 481 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 NARSO43776 548 aaKnown RBP20.43■□□□□ 0.86
UPF3A-211ENST00000618700 ARSAP15289 507 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 TNK2Q07912 1038 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 SCAPQ12770 1279 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 ADGRF1Q5T601 910 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 PIK3R6Q5UE93 754 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 CPNE8Q86YQ8 564 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 ADGRG2Q8IZP9 1017 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 CCDC185Q8N715 623 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 CALR3Q96L12 384 aaKnown RBP20.43■□□□□ 0.86
UPF3A-211ENST00000618700 PEBP4Q96S96 227 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 EBF3Q9H4W6 596 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 TMPRSS4Q9NRS4 437 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 SLC12A6Q9UHW9 1150 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 TTC28Q96AY4 2481 aa20.43■□□□□ 0.86
UPF3A-211ENST00000618700 CUL9Q8IWT3 2517 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 BUB1BO60566 1050 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-211ENST00000618700 PAGE1O75459 146 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 NFATC1O95644 943 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 CYP17A1P05093 508 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 MIPP30301 263 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 ADRA1BP35368 520 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 NOP2P46087 812 aaKnown RBP20.42■□□□□ 0.86
UPF3A-211ENST00000618700 VCPP55072 806 aaKnown RBP20.42■□□□□ 0.86
UPF3A-211ENST00000618700 MESDQ14696 234 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 MS4A13Q5J8X5 152 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 DAB2IPQ5VWQ8 1189 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 TPCN2Q8NHX9 752 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 DNASE1L2Q92874 299 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 IRF7Q92985 503 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 HAPLN3Q96S86 360 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 PRMT1Q99873 361 aaKnown RBP20.42■□□□□ 0.86
UPF3A-211ENST00000618700 TSGA10Q9BZW7 698 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 PPP2R2CQ9Y2T4 447 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 HS3ST4Q9Y661 456 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 A0A0C4DFX4 3053 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 NCOR1O75376 2440 aa20.42■□□□□ 0.86
UPF3A-211ENST00000618700 BDP1A6H8Y1 2624 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 BUB1O43683 1085 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 TCF4P15884 667 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 IL1R2P27930 398 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 SLC6A4P31645 630 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 CHKAP35790 457 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 AIF1P55008 147 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 SLC25A11Q02978 314 aaKnown RBP20.41■□□□□ 0.86
UPF3A-211ENST00000618700 RUNX3Q13761 415 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 DHCR24Q15392 516 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 ARL13BQ3SXY8 428 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 ARTNQ5T4W7 220 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 C11orf63Q6NUN7 778 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 SCYL2Q6P3W7 929 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 P2RY11Q96G91 374 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 PRICKLE1Q96MT3 831 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-211ENST00000618700 IRX2Q9BZI1 471 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-211ENST00000618700 ECT2Q9H8V3 914 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 SPHK2Q9NRA0 654 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 MARK1Q9P0L2 795 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 FZD10Q9ULW2 581 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 USP18Q9UMW8 372 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 TICRRQ7Z2Z1 1910 aa20.41■□□□□ 0.86
UPF3A-211ENST00000618700 GOLGA6L7A0A1B0GV03 622 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 OTOL1A6NHN0 477 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-211ENST00000618700 KRT86O43790 486 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 MLLT6P55198 1093 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-211ENST00000618700 PFKPQ01813 784 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 LY6G5CQ5SRR4 150 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 ACBD5Q5T8D3 534 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-211ENST00000618700 RAP1GAP2Q684P5 730 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 RFWD3Q6PCD5 774 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 RHBDF2Q6PJF5 856 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 SLFN11Q7Z7L1 901 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 CHSY1Q86X52 802 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 TMEM25Q86YD3 366 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 CPA6Q8N4T0 437 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 MYEOVQ96EZ4 313 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 C1orf74Q96LT6 269 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 DDX50Q9BQ39 737 aaKnown RBP20.4■□□□□ 0.86
UPF3A-211ENST00000618700 GTSE1Q9NYZ3 720 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 PCSK1NQ9UHG2 260 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 MUTYHQ9UIF7 546 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 PYCARDQ9ULZ3 195 aa20.4■□□□□ 0.86
UPF3A-211ENST00000618700 MACROD2A1Z1Q3 448 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 TMEM110-MUSTN1A8MSY1 372 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 HOXC11O43248 304 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 PRPSAP2O60256 369 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 ADH1CP00326 375 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 PENKP01210 267 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 TACR2P21452 398 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 GGCXP38435 758 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 SLC1A1P43005 524 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 NRG1Q02297 640 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 GAB4Q2WGN9 574 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 ITPRIPL2Q3MIP1 535 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms