RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DCAF6Q58WW2 860 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 NADSYN1Q6IA69 706 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 CAVIN1Q6NZI2 390 aaKnown RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 DEFB106AQ8N104 65 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 AOPEPQ8N6M6 819 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 HJURPQ8NCD3 748 aaPredicted RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 MSANTD4Q8NCY6 345 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 ADAM32Q8TC27 787 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 BTN2A3PQ96KV6 586 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 ACOX2Q99424 681 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 TPSD1Q9BZJ3 242 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 DUSP15Q9H1R2 295 aaPredicted RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 CD248Q9HCU0 757 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 FAM207AQ9NSI2 230 aaPredicted RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 TMEM51Q9NW97 253 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 RRN3Q9NYV6 651 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 BCCIPQ9P287 314 aaKnown RBP eCLIP15.41■□□□□ 0.06
SS18-212ENST00000579061 A0A1W2PQF6 199 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SMTNL1A8MU46 457 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 DAB1O75553 588 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 HLA-FP30511 346 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 NOS2P35228 1153 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SOX5P35711 763 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 P2RY2P41231 377 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 WASP42768 502 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 KLK7P49862 253 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 LMNB2Q03252 620 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 UBXN1Q04323 297 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SPEM2Q0P670 501 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 TAF5Q15542 800 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 CSRP2Q16527 193 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 ZC3H12AQ5D1E8 599 aaKnown RBP15.4■□□□□ 0.06
SS18-212ENST00000579061 MS4A13Q5J8X5 152 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 RFWD3Q6PCD5 774 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 NOP9Q86U38 636 aaKnown RBP15.4■□□□□ 0.06
SS18-212ENST00000579061 ERICH1Q86X53 443 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 ATP6V0D2Q8N8Y2 350 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 NEK11Q8NG66 645 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 HMGB4Q8WW32 186 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 C18orf8Q96DM3 657 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SPACA7Q96KW9 195 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SPAG5Q96R06 1193 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 PARD6AQ9NPB6 346 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 SLC12A6Q9UHW9 1150 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 USP18Q9UMW8 372 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 STON1Q9Y6Q2 735 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 CEP192Q8TEP8 1941 aa15.4■□□□□ 0.06
SS18-212ENST00000579061 GOLGA6L7A0A1B0GV03 622 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PRR5-ARHGAP8B1AHC4 643 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 DCLK1O15075 740 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 EPHB6O15197 1021 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 TBL1XO60907 577 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 GFPT2O94808 682 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 MMEP08473 750 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PABPC1P11940 636 aaKnown RBP15.39■□□□□ 0.05
SS18-212ENST00000579061 GABRG2P18507 467 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PTMSP20962 102 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 CCR1P32246 355 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 STAT1P42224 750 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 SGSHP51688 502 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PITX1P78337 314 aaPredicted RBP15.39■□□□□ 0.05
SS18-212ENST00000579061 ARHGAP8P85298 464 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 STARD3Q14849 445 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 KLHL40Q2TBA0 621 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 TAF3Q5VWG9 929 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PMS2CLQ68D20 193 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 TMEM215Q68D42 235 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 AHI1Q8N157 1196 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 PGBD3Q8N328 593 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 FIBINQ8TAL6 211 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 NUCKS1Q9H1E3 243 aaKnown RBP15.39■□□□□ 0.05
SS18-212ENST00000579061 FAM204AQ9H8W3 233 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 NLRC4Q9NPP4 1024 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 SEMA4GQ9NTN9 838 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 DDIT4Q9NX09 232 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 CACNA2D2Q9NY47 1150 aa15.39■□□□□ 0.05
SS18-212ENST00000579061 NOCTQ9UK39 431 aaKnown RBP15.39■□□□□ 0.05
SS18-212ENST00000579061 KCNU1A8MYU2 1149 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 ZNF217O75362 1048 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 GRAP2O75791 330 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 MOCS2O96007 188 aaPredicted RBP15.38■□□□□ 0.05
SS18-212ENST00000579061 SDHBP21912 280 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 MATKP42679 507 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 IL12RB1P42701 662 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 NOMO3P69849 1222 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 CDR2Q01850 454 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 ZNF234Q14588 700 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 MAP7D1Q3KQU3 841 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 SPDYCQ5MJ68 293 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 KIAA1211LQ6NV74 962 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 TRIM72Q6ZMU5 477 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 CHST9Q7L1S5 443 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 ARCQ7LC44 396 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 METTL3Q86U44 580 aaKnown RBP15.38■□□□□ 0.05
SS18-212ENST00000579061 XYLT1Q86Y38 959 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 DHX40Q8IX18 779 aaKnown RBP15.38■□□□□ 0.05
SS18-212ENST00000579061 PCMTD1Q96MG8 357 aaPredicted RBP15.38■□□□□ 0.05
SS18-212ENST00000579061 PRICKLE1Q96MT3 831 aaPredicted RBP15.38■□□□□ 0.05
SS18-212ENST00000579061 FUCA2Q9BTY2 467 aa15.38■□□□□ 0.05
SS18-212ENST00000579061 CIPCQ9C0C6 399 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms