RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 PTPN20Q4JDL3 420 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 DCAF6Q58WW2 860 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 ZC3H12AQ5D1E8 599 aaKnown RBP19.09■□□□□ 0.65
CLN3-237ENST00000569030 RNF43Q68DV7 783 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 FAM183BPQ6ZVS7 135 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 C11orf74Q86VG3 221 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 DEFB106AQ8N104 65 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 DDX1Q92499 740 aaKnown RBP19.09■□□□□ 0.65
CLN3-237ENST00000569030 SLC2A13Q96QE2 648 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 TRIM62Q9BVG3 475 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 STK33Q9BYT3 514 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 NUCKS1Q9H1E3 243 aaKnown RBP19.09■□□□□ 0.65
CLN3-237ENST00000569030 GANQ9H2C0 597 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 ABCB8Q9NUT2 735 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 TMEM63CQ9P1W3 806 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 CALCOCO1Q9P1Z2 691 aa19.09■□□□□ 0.65
CLN3-237ENST00000569030 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 FAM170AA1A519 330 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 BCLAF3A2AJT9 711 aaKnown RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 IRAK2O43187 625 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 MOCS2O96007 188 aaPredicted RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 MPLP40238 635 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 ATXN1P54253 815 aaKnown RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 ZNF234Q14588 700 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 EFHC1Q5JVL4 640 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 MPP7Q5T2T1 576 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 OR6B2Q6IFH4 312 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 OLFML1Q6UWY5 402 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 KIAA0907Q7Z7F0 614 aaPredicted RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 ADIPOR2Q86V24 386 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 UCMAQ8WVF2 138 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 PRICKLE1Q96MT3 831 aaPredicted RBP19.08■□□□□ 0.64
CLN3-237ENST00000569030 NOX5Q96PH1 765 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 CIPCQ9C0C6 399 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 HSD3B7Q9H2F3 369 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 CD93Q9NPY3 652 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 RXFP3Q9NSD7 469 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 ASNSD1Q9NWL6 643 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 STIM2Q9P246 746 aa19.08■□□□□ 0.64
CLN3-237ENST00000569030 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 F8VZ95 297 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 NPC1O15118 1278 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 EPHB6O15197 1021 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 MAP3K13O43283 966 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 TIMM44O43615 452 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 CAVIN2O95810 425 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 GLI1P08151 1106 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 CD70P32970 193 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 CDH5P33151 784 aaPredicted RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 COPB1P53618 953 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 RPS24P62847 133 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 MYL5Q02045 173 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 NCAPHQ15003 741 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 EIF4HQ15056 248 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 FUT11Q495W5 492 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 TAF3Q5VWG9 929 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 NOP9Q86U38 636 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 TMEFF1Q8IYR6 380 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 CFAP52Q8N1V2 620 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-237ENST00000569030 LMLNQ96KR4 655 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 SPACA7Q96KW9 195 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 MRGPRX1Q96LB2 322 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 IRX2Q9BZI1 471 aaPredicted RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 LIMA1Q9UHB6 759 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 GGA2Q9UJY4 613 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 CDV3Q9UKY7 258 aaKnown RBP19.07■□□□□ 0.64
CLN3-237ENST00000569030 SIK3Q9Y2K2 1263 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 NCOR2Q9Y618 2525 aa19.07■□□□□ 0.64
CLN3-237ENST00000569030 HSF2BPO75031 334 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 PABPC1P11940 636 aaKnown RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 ZNF18P17022 549 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 PRKCHP24723 683 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 DHPSP49366 369 aaPredicted RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 SLC6A3Q01959 620 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 BYSLQ13895 437 aaKnown RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 MS4A13Q5J8X5 152 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 TCEAL6Q6IPX3 200 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 CHST9Q7L1S5 443 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 HJURPQ8NCD3 748 aaPredicted RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 TMEM35BQ8NCS4 154 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 CYB5D2Q8WUJ1 264 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 TCEAL3Q969E4 200 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 DDX50Q9BQ39 737 aaKnown RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 PDCL3Q9H2J4 239 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 SYNCQ9H7C4 482 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 FAM204AQ9H8W3 233 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 VPS45Q9NRW7 570 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 FAM207AQ9NSI2 230 aaPredicted RBP19.06■□□□□ 0.64
CLN3-237ENST00000569030 CEP83Q9Y592 693 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 NUMA1Q14980 2115 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 ADAMTS9Q9P2N4 1935 aa19.06■□□□□ 0.64
CLN3-237ENST00000569030 SYNJ2BP-COX16A0A087WUM0 186 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 IGHV1OR15-9A0A0B4J2B8 117 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 KCNU1A8MYU2 1149 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 ZBTB24O43167 697 aaPredicted RBP19.05■□□□□ 0.64
CLN3-237ENST00000569030 APOEP02649 317 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 TPM2P07951 284 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 MMEP08473 750 aa19.05■□□□□ 0.64
CLN3-237ENST00000569030 SDHBP21912 280 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms