RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 EPHX1P07099 455 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 PON1P27169 355 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 APBA1Q02410 837 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 DUOXA1Q1HG43 343 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 FAM133BQ5BKY9 247 aaKnown RBP23.36■■□□□ 1.33
CLN3-215ENST00000565236 SLC23A3Q6PIS1 610 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 CHST9Q7L1S5 443 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 TMEM110Q86TL2 294 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 TMPRSS6Q8IU80 811 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 SIPA1Q96FS4 1042 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 THAP9Q9H5L6 903 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 CD93Q9NPY3 652 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 GGA2Q9UJY4 613 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 E5RJQ4 531 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 PABPC1P11940 636 aaKnown RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 PRKCHP24723 683 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 CD6P30203 668 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 SLC6A4P31645 630 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 SGSHP51688 502 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 NNTQ13423 1086 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 FNDC3BQ53EP0 1204 aaKnown RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 PEAR1Q5VY43 1037 aaPredicted RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 BEND5Q7L4P6 421 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 RABEPKQ7Z6M1 372 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 SLC41A1Q8IVJ1 513 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 FAM114A1Q8IWE2 563 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 AHI1Q8N157 1196 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 ADAM32Q8TC27 787 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 PRCCQ92733 491 aaPredicted RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 FCRL2Q96LA5 508 aaPredicted RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 HSPA12BQ96MM6 686 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 ITM2CQ9NQX7 267 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 STIM2Q9P246 746 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 CYTH4Q9UIA0 394 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 SLC6A14Q9UN76 642 aa23.35■■□□□ 1.33
CLN3-215ENST00000565236 TPRP12270 2363 aaKnown RBP23.35■■□□□ 1.33
CLN3-215ENST00000565236 TYW5A2RUC4 315 aaKnown RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 BECN2A8MW95 431 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 PAPSS1O43252 624 aaPredicted RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 ATP5BP06576 529 aaKnown RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 ACADMP11310 421 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 YWHAZP63104 245 aaKnown RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 UAP1L1Q3KQV9 507 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 SYCP2LQ5T4T6 812 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 N4BP2L1Q5TBK1 243 aaPredicted RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 SYPL2Q5VXT5 272 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 KIAA0907Q7Z7F0 614 aaPredicted RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 ADIPOR2Q86V24 386 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 RGL4Q8IZJ4 473 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-215ENST00000565236 ZNF557Q8N988 423 aaPredicted RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 CYB5D2Q8WUJ1 264 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 SHC3Q92529 594 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 FOXJ1Q92949 421 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 TOE1Q96GM8 510 aaKnown RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 ZNF419Q96HQ0 510 aaPredicted RBP23.34■■□□□ 1.33
CLN3-215ENST00000565236 POPDC2Q9HBU9 364 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 DACH1Q9UI36 760 aa23.34■■□□□ 1.33
CLN3-215ENST00000565236 SERPINF2P08697 491 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 HLA-EP13747 358 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 ENGP17813 658 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 POLR2EP19388 210 aaKnown RBP23.33■■□□□ 1.33
CLN3-215ENST00000565236 OXTRP30559 389 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 MAPK8P45983 427 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 PTK2Q05397 1052 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 GFPT1Q06210 699 aaPredicted RBP23.33■■□□□ 1.33
CLN3-215ENST00000565236 PDCLQ13371 301 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 MAN2A1Q16706 1144 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 MBLAC2Q68D91 279 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 NADSYN1Q6IA69 706 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 PSAPL1Q6NUJ1 521 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 CCDC117Q8IWD4 279 aaPredicted RBP23.33■■□□□ 1.33
CLN3-215ENST00000565236 HJURPQ8NCD3 748 aaPredicted RBP23.33■■□□□ 1.33
CLN3-215ENST00000565236 SLC39A13Q96H72 371 aa23.33■■□□□ 1.33
CLN3-215ENST00000565236 USP36Q9P275 1121 aaKnown RBP23.33■■□□□ 1.33
CLN3-215ENST00000565236 MOCS2O96007 188 aaPredicted RBP23.32■■□□□ 1.32
CLN3-215ENST00000565236 ERCC5P28715 1186 aaPredicted RBP23.32■■□□□ 1.32
CLN3-215ENST00000565236 NOVA1P51513 510 aaKnown RBP23.32■■□□□ 1.32
CLN3-215ENST00000565236 TPMTP51580 245 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 COPAP53621 1224 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 ATXN3P54252 364 aaPredicted RBP23.32■■□□□ 1.32
CLN3-215ENST00000565236 DPCR1Q3MIW9 517 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 WDR45BQ5MNZ6 344 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 SMYD5Q6GMV2 418 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 TAC4Q86UU9 113 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 MFN1Q8IWA4 741 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 WFDC5Q8TCV5 224 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 NUP62CLQ9H1M0 184 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 WSB2Q9NYS7 404 aaPredicted RBP23.32■■□□□ 1.32
CLN3-215ENST00000565236 DNAJC12Q9UKB3 198 aa23.32■■□□□ 1.32
CLN3-215ENST00000565236 KCNJ18B7U540 433 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 APOEP02649 317 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 DLDP09622 509 aaKnown RBP23.31■■□□□ 1.32
CLN3-215ENST00000565236 PRKCSHP14314 528 aaPredicted RBP23.31■■□□□ 1.32
CLN3-215ENST00000565236 CD70P32970 193 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 CAMK2GQ13555 558 aaPredicted RBP23.31■■□□□ 1.32
CLN3-215ENST00000565236 WDTC1Q8N5D0 677 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 OR2T3Q8NH03 318 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 FIBINQ8TAL6 211 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 PPP1R13BQ96KQ4 1090 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms