RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 PTPN20Q4JDL3 420 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 DCAF6Q58WW2 860 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 ZC3H12AQ5D1E8 599 aaKnown RBP19.09■□□□□ 0.65
CLN3-214ENST00000565140 RNF43Q68DV7 783 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 FAM183BPQ6ZVS7 135 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 C11orf74Q86VG3 221 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 DEFB106AQ8N104 65 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 DDX1Q92499 740 aaKnown RBP19.09■□□□□ 0.65
CLN3-214ENST00000565140 SLC2A13Q96QE2 648 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 TRIM62Q9BVG3 475 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 STK33Q9BYT3 514 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 NUCKS1Q9H1E3 243 aaKnown RBP19.09■□□□□ 0.65
CLN3-214ENST00000565140 GANQ9H2C0 597 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 ABCB8Q9NUT2 735 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 TMEM63CQ9P1W3 806 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 CALCOCO1Q9P1Z2 691 aa19.09■□□□□ 0.65
CLN3-214ENST00000565140 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 FAM170AA1A519 330 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 BCLAF3A2AJT9 711 aaKnown RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 IRAK2O43187 625 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 MOCS2O96007 188 aaPredicted RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 MPLP40238 635 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 ATXN1P54253 815 aaKnown RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 ZNF234Q14588 700 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 EFHC1Q5JVL4 640 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 MPP7Q5T2T1 576 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 OR6B2Q6IFH4 312 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 OLFML1Q6UWY5 402 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 KIAA0907Q7Z7F0 614 aaPredicted RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 ADIPOR2Q86V24 386 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 UCMAQ8WVF2 138 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 PRICKLE1Q96MT3 831 aaPredicted RBP19.08■□□□□ 0.64
CLN3-214ENST00000565140 NOX5Q96PH1 765 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 CIPCQ9C0C6 399 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 HSD3B7Q9H2F3 369 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 CD93Q9NPY3 652 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 RXFP3Q9NSD7 469 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 ASNSD1Q9NWL6 643 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 STIM2Q9P246 746 aa19.08■□□□□ 0.64
CLN3-214ENST00000565140 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 F8VZ95 297 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 NPC1O15118 1278 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 EPHB6O15197 1021 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 MAP3K13O43283 966 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 TIMM44O43615 452 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 CAVIN2O95810 425 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 GLI1P08151 1106 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 CD70P32970 193 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 CDH5P33151 784 aaPredicted RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 COPB1P53618 953 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 RPS24P62847 133 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 MYL5Q02045 173 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 NCAPHQ15003 741 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 EIF4HQ15056 248 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 FUT11Q495W5 492 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 TAF3Q5VWG9 929 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 NOP9Q86U38 636 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 TMEFF1Q8IYR6 380 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 CFAP52Q8N1V2 620 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-214ENST00000565140 LMLNQ96KR4 655 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 SPACA7Q96KW9 195 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 MRGPRX1Q96LB2 322 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 IRX2Q9BZI1 471 aaPredicted RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 LIMA1Q9UHB6 759 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 GGA2Q9UJY4 613 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 CDV3Q9UKY7 258 aaKnown RBP19.07■□□□□ 0.64
CLN3-214ENST00000565140 SIK3Q9Y2K2 1263 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 NCOR2Q9Y618 2525 aa19.07■□□□□ 0.64
CLN3-214ENST00000565140 HSF2BPO75031 334 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 PABPC1P11940 636 aaKnown RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 ZNF18P17022 549 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 PRKCHP24723 683 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 DHPSP49366 369 aaPredicted RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 SLC6A3Q01959 620 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 BYSLQ13895 437 aaKnown RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 MS4A13Q5J8X5 152 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 TCEAL6Q6IPX3 200 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 CHST9Q7L1S5 443 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 HJURPQ8NCD3 748 aaPredicted RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 TMEM35BQ8NCS4 154 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 CYB5D2Q8WUJ1 264 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 TCEAL3Q969E4 200 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 DDX50Q9BQ39 737 aaKnown RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 PDCL3Q9H2J4 239 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 SYNCQ9H7C4 482 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 FAM204AQ9H8W3 233 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 VPS45Q9NRW7 570 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 FAM207AQ9NSI2 230 aaPredicted RBP19.06■□□□□ 0.64
CLN3-214ENST00000565140 CEP83Q9Y592 693 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 NUMA1Q14980 2115 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 ADAMTS9Q9P2N4 1935 aa19.06■□□□□ 0.64
CLN3-214ENST00000565140 SYNJ2BP-COX16A0A087WUM0 186 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 IGHV1OR15-9A0A0B4J2B8 117 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 KCNU1A8MYU2 1149 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 ZBTB24O43167 697 aaPredicted RBP19.05■□□□□ 0.64
CLN3-214ENST00000565140 APOEP02649 317 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 TPM2P07951 284 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 MMEP08473 750 aa19.05■□□□□ 0.64
CLN3-214ENST00000565140 SDHBP21912 280 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms