RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SLC44A4Q53GD3 710 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 PAQR9Q6ZVX9 377 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ANKS1BQ7Z6G8 1248 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 RCOR2Q8IZ40 523 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 JOSD2Q8TAC2 188 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ATG4AQ8WYN0 398 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 SLCO2A1Q92959 643 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 RNF25Q96BH1 459 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 SLC22A12Q96S37 553 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 CYP2S1Q96SQ9 504 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 TRMT61BQ9BVS5 477 aaKnown RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 BRD9Q9H8M2 597 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 TRPV4Q9HBA0 871 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 METTL5Q9NRN9 209 aaKnown RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ZDHHC18Q9NUE0 388 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ADAM21Q9UKJ8 722 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 SNX24Q9Y343 169 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 MTF2Q9Y483 593 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ZFHX2Q9C0A1 2572 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ECEL1O95672 775 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 KRT1P04264 644 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 DCNP07585 359 aaKnown RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FAM163BP0C2L3 166 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 CCDC130P13994 396 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 HSD17B3P37058 310 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 CETN2P41208 172 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 RPL21P46778 160 aaKnown RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 IFRD2Q12894 506 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 GOLGA7BQ2TAP0 167 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 ARHGAP15Q53QZ3 475 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 ZFYVE27Q5T4F4 411 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 VSTM1Q6UX27 236 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TMC3Q7Z5M5 1100 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 GOLGA6L1Q8N7Z2 621 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TTC16Q8NEE8 873 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TTC8Q8TAM2 541 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 RIN3Q8TB24 985 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 IPO4Q8TEX9 1081 aaKnown RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FNIP1Q8TF40 1166 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 RBM41Q96IZ5 413 aaKnown RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 SLITRK1Q96PX8 696 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 GCNAQ96QF7 691 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FMO2Q99518 471 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 DCLK3Q9C098 648 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TASP1Q9H6P5 420 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FAM49BQ9NUQ9 324 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 GRHL1Q9NZI5 618 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 R3HDM2Q9Y2K5 976 aaKnown RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 C2orf78A6NCI8 922 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 SHISA7A6NL88 538 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FGF19O95750 216 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 AOC1P19801 751 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 GBP1P32455 592 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 SLC20A2Q08357 652 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 PDE4CQ08493 712 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TCF15Q12870 199 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 PPP1R7Q15435 360 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 PPP1R26Q5T8A7 1209 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TXNRD3NBQ6F5E7 133 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 DENND5BQ6ZUT9 1274 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 UNC93AQ86WB7 457 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 MFSD6LQ8IWD5 586 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 CMTM8Q8IZV2 173 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FUKQ8N0W3 1084 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 EMC1Q8N766 993 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 MYRFLQ96LU7 910 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 FAM204AQ9H8W3 233 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 TRPC7Q9HCX4 862 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 HOMER3Q9NSC5 361 aa12.4□□□□□ -0.42
CLIP1-208ENST00000537004 ZNF638Q14966 1978 aaKnown RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 BEST1O76090 585 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 GLULP15104 373 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 CLCN5P51795 746 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 PLTPP55058 493 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 DHX9Q08211 1270 aaKnown RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 MLF2Q15773 248 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 UAP1Q16222 522 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 ODF2Q5BJF6 829 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 FAM102AQ5T9C2 384 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 ZDHHC24Q6UX98 284 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 MFSD7Q6UXD7 560 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 POLNQ7Z5Q5 900 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 FAM35AQ86V20 835 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 SCAMP5Q8TAC9 235 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 FBXO25Q8TCJ0 367 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 SLC2A14Q8TDB8 520 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 MED10Q9BTT4 135 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 DDX56Q9NY93 547 aaKnown RBP12.39□□□□□ -0.43
CLIP1-208ENST00000537004 PLAAQ9Y263 795 aa12.39□□□□□ -0.43
CLIP1-208ENST00000537004 GOLGA8KD6RF30 607 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 E5RJQ4 531 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 H0Y858 1186 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 ARNTLO00327 626 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 DPYSL4O14531 572 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 LRCH4O75427 683 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 KRT14P02533 472 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 AVPR1AP37288 418 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 SOX9P48436 509 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 COPS2P61201 443 aa12.38□□□□□ -0.43
CLIP1-208ENST00000537004 PFKPQ01813 784 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms