RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC25A52Q3SY17 297 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 C2orf27AQ580R0 203 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 TRNP1Q6NT89 227 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 RFWD3Q6PCD5 774 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 TSSK4Q6SA08 328 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 ATP6V0D2Q8N8Y2 350 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 HJURPQ8NCD3 748 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 C3orf20Q8ND61 904 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 PDLIM2Q96JY6 352 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 PRICKLE1Q96MT3 831 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 ADAM33Q9BZ11 813 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 HAUS4Q9H6D7 363 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 METTL5Q9NRN9 209 aaKnown RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 ZSCAN32Q9NX65 697 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 CALCOCO1Q9P1Z2 691 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 XPO7Q9UIA9 1087 aaKnown RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 CAPN11Q9UMQ6 739 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 STARD13Q9Y3M8 1113 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 SYNJ2BP-COX16A0A087WUM0 186 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 GOLGA6L7A0A1B0GV03 622 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 TYW5A2RUC4 315 aaKnown RBP15.59■□□□□ 0.09
CPSF1-208ENST00000532560 TSPAN3O60637 253 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 GYPCP04921 128 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ABCB4P21439 1286 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 TNFAIP3P21580 790 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 KLHL30Q0D2K2 578 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 NME3Q13232 169 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 MS4A13Q5J8X5 152 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ACAD10Q6JQN1 1059 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ZNF571Q7Z3V5 609 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-208ENST00000532560 BNIPLQ7Z465 357 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 TRMT11Q7Z4G4 463 aaKnown RBP15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ANKS1BQ7Z6G8 1248 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 CHSY1Q86X52 802 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 IL17RCQ8NAC3 791 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ZBTB44Q8NCP5 570 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 TBCBQ99426 244 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 RRAGDQ9NQL2 400 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-208ENST00000532560 PIGVQ9NUD9 493 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 COX16Q9P0S2 106 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 SLC12A6Q9UHW9 1150 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 CLEC4EQ9ULY5 219 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 MMP17Q9ULZ9 603 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 SLC8A2Q9UPR5 921 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 PAXBP1Q9Y5B6 917 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ATG2BQ96BY7 2078 aa15.59■□□□□ 0.09
CPSF1-208ENST00000532560 ANTXRLA6NF34 631 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 PRRT4C9JH25 899 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 PROB1E7EW31 1015 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 KLF8O95600 359 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 F9P00740 461 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 TFE3P19532 575 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 TIE1P35590 1138 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 CXCR3P49682 368 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 DMC1Q14565 340 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 BRMS1LQ5PSV4 323 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 MCOLN2Q8IZK6 566 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 CAMKK1Q8N5S9 505 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 ALLCQ8N6M5 410 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 EMC1Q8N766 993 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 ZNF513Q8N8E2 541 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 ZNF557Q8N988 423 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 TXNDC5Q8NBS9 432 aaKnown RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 RNF34Q969K3 372 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 PRMT1Q99873 361 aaKnown RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 RBSNQ9H1K0 784 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 ARHGEF38Q9NXL2 777 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 HCN2Q9UL51 889 aa15.58■□□□□ 0.08
CPSF1-208ENST00000532560 LUC7L2Q9Y383 392 aaKnown RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 BZW2Q9Y6E2 419 aaKnown RBP15.58■□□□□ 0.08
CPSF1-208ENST00000532560 CCDC163A0A0D9SF12 145 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 TCRBV5S1A1TA0A578 114 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 C2CD4BA6NLJ0 364 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 F5H5T6 163 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 TBL1XO60907 577 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 LILRB5O75023 590 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 KRT3P12035 628 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 GZMAP12544 262 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 TACR2P21452 398 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 HLA-FP30511 346 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 RDXP35241 583 aaKnown RBP15.57■□□□□ 0.08
CPSF1-208ENST00000532560 PTPN9P43378 593 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 RPS24P62847 133 aaKnown RBP15.57■□□□□ 0.08
CPSF1-208ENST00000532560 DEUP1Q05D60 604 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 TRIM14Q14142 442 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 EIF4HQ15056 248 aaKnown RBP15.57■□□□□ 0.08
CPSF1-208ENST00000532560 GEN1Q17RS7 908 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 EOGTQ5NDL2 527 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 EMC10Q5UCC4 262 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 RAP1GAP2Q684P5 730 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 HGSNATQ68CP4 663 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 SPECC1LQ69YQ0 1117 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 DNAJC24Q6P3W2 148 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 SARM1Q6SZW1 724 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 SND1Q7KZF4 910 aaKnown RBP eCLIP15.57■□□□□ 0.08
CPSF1-208ENST00000532560 ZSCAN30Q86W11 494 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 LGI2Q8N0V4 545 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 WFIKKN2Q8TEU8 576 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms