RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PRR23CQ6ZRP0 262 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 FAM183BPQ6ZVS7 135 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 KIAA0907Q7Z7F0 614 aaPredicted RBP21.4■■□□□ 1.02
VPS28-206ENST00000526734 ATP6V0D2Q8N8Y2 350 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 CIPCQ9C0C6 399 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 FAM204AQ9H8W3 233 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 CD248Q9HCU0 757 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 VPS45Q9NRW7 570 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 CACNA2D2Q9NY47 1150 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 DLL3Q9NYJ7 618 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 TMEM63CQ9P1W3 806 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 TJP2Q9UDY2 1190 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 CFAP54Q96N23 3096 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 DCLK1O15075 740 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 TBL1XO60907 577 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 ERBB2P04626 1255 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 ZNF806P0C7X5 589 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 PABPC1P11940 636 aaKnown RBP21.39■■□□□ 1.01
VPS28-206ENST00000526734 ZNF18P17022 549 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 CDK11BP21127 795 aaKnown RBP21.39■■□□□ 1.01
VPS28-206ENST00000526734 HLA-FP30511 346 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 SLC6A4P31645 630 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 MPLP40238 635 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 EIF4EBP2Q13542 120 aaPredicted RBP21.39■■□□□ 1.01
VPS28-206ENST00000526734 NADSYN1Q6IA69 706 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 RFWD3Q6PCD5 774 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 SLC36A4Q6YBV0 504 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 LPCAT2Q7L5N7 544 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 ERMP1Q7Z2K6 904 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 DEFB106AQ8N104 65 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 ADAM32Q8TC27 787 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 NETO1Q8TDF5 533 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 EPS8L1Q8TE68 723 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 SPAG5Q96R06 1193 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 BPIFA3Q9BQP9 254 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 ARRDC1-AS1Q9H2J1 176 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 FAM207AQ9NSI2 230 aaPredicted RBP21.39■■□□□ 1.01
VPS28-206ENST00000526734 GGA2Q9UJY4 613 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 CDV3Q9UKY7 258 aaKnown RBP21.39■■□□□ 1.01
VPS28-206ENST00000526734 CLEC4EQ9ULY5 219 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 SIK3Q9Y2K2 1263 aa21.39■■□□□ 1.01
VPS28-206ENST00000526734 EML5Q05BV3 1969 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 ATP5BP06576 529 aaKnown RBP21.38■■□□□ 1.01
VPS28-206ENST00000526734 ABCB4P21439 1286 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 CCR1P32246 355 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 NOS2P35228 1153 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 GABRB2P47870 512 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 FOXK2Q01167 660 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 ZNF234Q14588 700 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 MAP7D1Q3KQU3 841 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 MS4A13Q5J8X5 152 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 PLA2G2CQ5R387 149 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 METTL3Q86U44 580 aaKnown RBP21.38■■□□□ 1.01
VPS28-206ENST00000526734 MFN1Q8IWA4 741 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 C12orf50Q8NA57 414 aaPredicted RBP21.38■■□□□ 1.01
VPS28-206ENST00000526734 DDX1Q92499 740 aaKnown RBP21.38■■□□□ 1.01
VPS28-206ENST00000526734 RMDN1Q96DB5 314 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 PRICKLE1Q96MT3 831 aaPredicted RBP21.38■■□□□ 1.01
VPS28-206ENST00000526734 ABCB8Q9NUT2 735 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 DDIT4Q9NX09 232 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 CALCOCO1Q9P1Z2 691 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 STAP1Q9ULZ2 295 aa21.38■■□□□ 1.01
VPS28-206ENST00000526734 SPAG17Q6Q759 2223 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 GOLGA6L7A0A1B0GV03 622 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 BCLAF3A2AJT9 711 aaKnown RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 MAP3K13O43283 966 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 SYNCRIPO60506 623 aaKnown RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 MOCS2O96007 188 aaPredicted RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 NDUFV2P19404 249 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 SOX5P35711 763 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 STAT1P42224 750 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 IL12RB1P42701 662 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 POLR2FP61218 127 aaKnown RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 NCAPHQ15003 741 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 SYCP1Q15431 976 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 TAF5Q15542 800 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 ZC3H12AQ5D1E8 599 aaKnown RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 TTC39BQ5VTQ0 682 aaPredicted RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 KIAA1211LQ6NV74 962 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 SERPINA13PQ6UXR4 307 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 CHST9Q7L1S5 443 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 NOP9Q86U38 636 aaKnown RBP21.37■■□□□ 1.01
VPS28-206ENST00000526734 CHSY1Q86X52 802 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 ERICH1Q86X53 443 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 NEK11Q8NG66 645 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 FIBINQ8TAL6 211 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 C18orf8Q96DM3 657 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 ERGIC2Q96RQ1 377 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 FBRSQ9HAH7 460 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 PLA2G4CQ9UP65 541 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 INVSQ9Y283 1065 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 PAXBP1Q9Y5B6 917 aa21.37■■□□□ 1.01
VPS28-206ENST00000526734 SMTNL1A8MU46 457 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 KCNU1A8MYU2 1149 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 AP5Z1O43299 807 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 ASLP04424 464 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 BCKDHBP21953 392 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 MATKP42679 507 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 SGSHP51688 502 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 JAM2P57087 298 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms