RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MGAT5Q09328 741 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 HIC1Q14526 733 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 MDH1BQ5I0G3 518 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 STXBP5Q5T5C0 1151 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 FAXCQ5TGI0 409 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 CLEC20AQ6ZU45 233 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 ZNF534Q76KX8 674 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 MARK2Q7KZI7 788 aaKnown RBP12.35□□□□□ -0.43
NUP54-202ENST00000502850 DEPDC1BQ8WUY9 529 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 SPOCK2Q92563 424 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 TTC17Q96AE7 1141 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 PGAP3Q96FM1 320 aaPredicted RBP12.35□□□□□ -0.43
NUP54-202ENST00000502850 SERAC1Q96JX3 654 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 TMEM237Q96Q45 408 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 MYLK2Q9H1R3 596 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 KRT82Q9NSB4 513 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 FAM105AQ9NUU6 356 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 ERI2A8K979 691 aaKnown RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 GOLGA8RI6L899 631 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 AP3B1O00203 1094 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 RNF103O00237 685 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 GPR182O15218 404 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 HCRTO43612 131 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 MFSD11O43934 449 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 ALDH1A2O94788 518 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 MX2P20592 715 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SERPINB6P35237 376 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SERPINB4P48594 390 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 TKTL1P51854 596 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 ATXN1P54253 815 aaKnown RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 BEX3Q00994 111 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SLC10A2Q12908 348 aaPredicted RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 MTM1Q13496 603 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 ZNF618Q5T7W0 954 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 WSCD1Q658N2 575 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 DSTYKQ6XUX3 929 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 TIFABQ6ZNK6 161 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 RFX8Q6ZV50 586 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SH2D5Q6ZV89 423 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 NLRP9Q7RTR0 991 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 FAM35AQ86V20 835 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 COLGALT1Q8NBJ5 622 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 IRGQQ8WZA9 623 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SMARCD1Q96GM5 515 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SENP8Q96LD8 212 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 FAM111AQ96PZ2 611 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SRPK1Q96SB4 655 aaKnown RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 LPIN3Q9BQK8 851 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 NOD2Q9HC29 1040 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 IGSF9Q9P2J2 1179 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SLC17A7Q9P2U7 560 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 GGT7Q9UJ14 662 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 ZFP69BQ9UJL9 534 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 DSEQ9UL01 958 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 RPL26L1Q9UNX3 145 aaKnown RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 CHKBQ9Y259 395 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 PLLPQ9Y342 182 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 CDY2AQ9Y6F7 541 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 SCN10AQ9Y5Y9 1956 aa12.34□□□□□ -0.43
NUP54-202ENST00000502850 TNRC18O15417 2968 aaPredicted RBP12.34□□□□□ -0.43
NUP54-202ENST00000502850 TNPO2O14787 897 aaKnown RBP12.33□□□□□ -0.43
NUP54-202ENST00000502850 BIRC5O15392 142 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 AP1G2O75843 785 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 MAP3K6O95382 1288 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 IGHA2P01877 340 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 ODC1P11926 461 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 VAV1P15498 845 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 CYP2B6P20813 491 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 PRMT2P55345 433 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 DAOAP59103 153 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 AP1B1Q10567 949 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 IFRD2Q12894 506 aaPredicted RBP12.33□□□□□ -0.43
NUP54-202ENST00000502850 DPYSQ14117 519 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 NBPF20Q3BBV1 942 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 DENND5BQ6ZUT9 1274 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 RPAINQ86UA6 219 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 METTL23Q86XA0 190 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 ZNF276Q8N554 614 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 ARRDC4Q8NCT1 418 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 ATP2A3Q93084 1043 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 C7orf26Q96N11 449 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 SIKE1Q9BRV8 207 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 NPHS2Q9NP85 383 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 BAIAP2L1Q9UHR4 511 aa12.33□□□□□ -0.43
NUP54-202ENST00000502850 DOCK3Q8IZD9 2030 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 WDR91A4D1P6 747 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 TRAFD1O14545 582 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 DNAJC6O75061 913 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 C6orf222P0C671 652 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 HOXD10P28358 340 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 CYP2C18P33260 490 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 CRHR1P34998 444 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 MLH1P40692 756 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 GARSP41250 739 aaKnown RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 GTF2A1P52655 376 aaPredicted RBP12.33□□□□□ -0.44
NUP54-202ENST00000502850 ARFIP2P53365 341 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 MAP3K7CLP57077 242 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 TPI1P60174 286 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 KCNJ2P63252 427 aa12.33□□□□□ -0.44
NUP54-202ENST00000502850 FRG1Q14331 258 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms