RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DENND1CQ8IV53 801 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 GJD3Q8N144 294 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 RSAD2Q8WXG1 361 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 IRF7Q92985 503 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 OTUB2Q96DC9 234 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 RPP25Q9BUL9 199 aaKnown RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 PLA2G2FQ9BZM2 168 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 BRD9Q9H8M2 597 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 GREB1Q4ZG55 1949 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 A0A0A6YYK5 440 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 TMEM110-MUSTN1A8MSY1 372 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 BTNL10A8MVZ5 291 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 KRT86O43790 486 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 ENDOD1O94919 500 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 LATS1O95835 1130 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 MOCS2O96007 188 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 ASGR2P07307 311 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 CCNYL3P0C7X3 344 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 TFE3P19532 575 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 CHKAP35790 457 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 CXCR3P49682 368 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 FCHO2Q0JRZ9 810 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 USP4Q13107 963 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 NR1H3Q13133 447 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 MESDQ14696 234 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 TCEAL1Q15170 157 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 HADHQ16836 314 aaKnown RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 ACBD5Q5T8D3 534 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 FAM131BQ86XD5 332 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 CSGALNACT1Q8TDX6 532 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 ADAMTS19Q8TE59 1207 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 OSCP1Q8WVF1 389 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 CENPIQ92674 756 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 ATP2A3Q93084 1043 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 AZIN2Q96A70 460 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 RSPRY1Q96DX4 576 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 SLC39A13Q96H72 371 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 BTBD6Q96KE9 485 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 BTN2A3PQ96KV6 586 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 FCRL2Q96LA5 508 aaPredicted RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 LRRC3BQ96PB8 259 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 TKTL2Q9H0I9 626 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 OSGEPQ9NPF4 335 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 PIGVQ9NUD9 493 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 AGO1Q9UL18 857 aaKnown RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 REXO2Q9Y3B8 237 aaKnown RBP10.68□□□□□ -0.7
SKA1-204ENST00000488454 WNT6Q9Y6F9 365 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 NOTCH4Q99466 2003 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 C2orf16Q68DN1 1984 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 PATJQ8NI35 1801 aa10.68□□□□□ -0.7
SKA1-204ENST00000488454 PRUNE2Q8WUY3 3088 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 DOCK6Q96HP0 2047 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 KCNU1A8MYU2 1149 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 SCAMP3O14828 347 aaKnown RBP10.67□□□□□ -0.7
SKA1-204ENST00000488454 PJA2O43164 708 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 ZSCAN12O43309 604 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 PRPSAP2O60256 369 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 GDF9O60383 454 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 ACSL4O60488 711 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 MTA2O94776 668 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 PROSCO94903 275 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 NFATC1O95644 943 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 IGLV3-27P01718 113 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 KLKB1P03952 638 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 CYBBP04839 570 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 PCK1P35558 622 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 ATXN1P54253 815 aaKnown RBP10.67□□□□□ -0.7
SKA1-204ENST00000488454 HDAC4P56524 1084 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 PFKPQ01813 784 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 OGDHQ02218 1023 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 EIF4EBP2Q13542 120 aaPredicted RBP10.67□□□□□ -0.7
SKA1-204ENST00000488454 ADGRF1Q5T601 910 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 SH3PXD2AQ5TCZ1 1133 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 SLFN11Q7Z7L1 901 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 RNF135Q8IUD6 432 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 BBS7Q8IWZ6 715 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 NIPA2Q8N8Q9 360 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 TRIM44Q96DX7 344 aaPredicted RBP10.67□□□□□ -0.7
SKA1-204ENST00000488454 HAPLN3Q96S86 360 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 TRIM7Q9C029 511 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 LACRTQ9GZZ8 138 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 SIK2Q9H0K1 926 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 LINC00597Q9H2U6 94 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 TFR2Q9UP52 801 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 SORCS3Q9UPU3 1222 aa10.67□□□□□ -0.7
SKA1-204ENST00000488454 MACROD2A1Z1Q3 448 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 TYW5A2RUC4 315 aaKnown RBP10.66□□□□□ -0.7
SKA1-204ENST00000488454 BUB1O43683 1085 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 ADH1CP00326 375 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 SRFP11831 508 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 MIPP30301 263 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 ADRA1BP35368 520 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 SLC1A1P43005 524 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 AIF1P55008 147 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 HADHBP55084 474 aaKnown RBP10.66□□□□□ -0.7
SKA1-204ENST00000488454 PRR20EP86478 221 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 PRR20CP86479 221 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 PRR20DP86480 221 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 PRR20BP86481 221 aa10.66□□□□□ -0.7
SKA1-204ENST00000488454 PRR20AP86496 221 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms