RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KCNT1Q5JUK3 1230 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 PTCRAQ6ISU1 281 aaPredicted RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 RWDD4Q6NW29 188 aaKnown RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 SYT10Q6XYQ8 523 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 HTR3DQ70Z44 454 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 BZW1Q7L1Q6 419 aaKnown RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 USP13Q92995 863 aaPredicted RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 SLC39A13Q96H72 371 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 ASB16Q96NS5 453 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 FERMT1Q9BQL6 677 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 SNRNP25Q9BV90 132 aaKnown RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 TUBB2BQ9BVA1 445 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 PHF7Q9BWX1 381 aaPredicted RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 GOLPH3Q9H4A6 298 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 RETREG1Q9H6L5 497 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 TRPV4Q9HBA0 871 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 RCOR3Q9P2K3 495 aaPredicted RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 FGF10O15520 208 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 IGLV3-27P01718 113 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TFE3P19532 575 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 L1CAMP32004 1257 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 KCNQ1P51787 676 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 PITX1P78337 314 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 SLC25A11Q02978 314 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 PREPLQ4J6C6 727 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 FAM78AQ5JUQ0 283 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 BNIPLQ7Z465 357 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 VSIG1Q86XK7 387 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 CCDC185Q8N715 623 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 SUSD6Q92537 303 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ATP2A3Q93084 1043 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ELSPBP1Q96BH3 223 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TBC1D31Q96DN5 1066 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 HES6Q96HZ4 224 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 RPRD1AQ96P16 312 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 SLC22A12Q96S37 553 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 SMG9Q9H0W8 520 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 CARD9Q9H257 536 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 DUS2Q9NX74 493 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 THEGQ9P2T0 379 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 SAR1BQ9Y6B6 198 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 DENND4AQ7Z401 1863 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 GOLGA6L10A0A0M3HER8 536 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 HEPACAM2A8MVW5 462 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ENC1O14682 589 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ZNF500O60304 480 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 ECI2O75521 394 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TJP3O95049 919 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 NFATC1O95644 943 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ADH1CP00326 375 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 PSMC3P17980 439 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TACR2P21452 398 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 KDELR1P24390 212 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 EPHB2P29323 1055 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 SERPINB6P35237 376 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ATXN1P54253 815 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 MLLT6P55198 1093 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 OXCT1P55809 520 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TAS2R40P59535 323 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 PDGFRLQ15198 375 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 DPYSL2Q16555 572 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 MPPE1Q53F39 396 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TFDP3Q5H9I0 405 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 DAB2IPQ5VWQ8 1189 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 NUDT18Q6ZVK8 323 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 RFX6Q8HWS3 928 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 LGI2Q8N0V4 545 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 HJURPQ8NCD3 748 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 DDI1Q8WTU0 396 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 TMA16Q96EY4 203 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 RPGRIP1Q96KN7 1286 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ZSWIM3Q96MP5 696 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 ZNF670Q9BS34 389 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 EPS15L1Q9UBC2 864 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 RNF14Q9UBS8 474 aa10.44□□□□□ -0.74
CD44-207ENST00000425428 AGO1Q9UL18 857 aaKnown RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 PACSIN2Q9UNF0 486 aaPredicted RBP10.44□□□□□ -0.74
CD44-207ENST00000425428 DOCK8Q8NF50 2099 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 ZNF487B1APH4 448 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 E9PAM4 449 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 CES2O00748 559 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 CEP104O60308 925 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 PRLRP16471 622 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 HCAR3P49019 387 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 NRG1Q02297 640 aaPredicted RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 USP4Q13107 963 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 EIF4EBP2Q13542 120 aaPredicted RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 AUHQ13825 339 aaKnown RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 SMAD2Q15796 467 aaKnown RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 MS4A13Q5J8X5 152 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 RAP1GAP2Q684P5 730 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 NYAP1Q6ZVC0 841 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 MFSD6LQ8IWD5 586 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 CPXM2Q8N436 756 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 CPA6Q8N4T0 437 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 CSGALNACT1Q8TDX6 532 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 RNF25Q96BH1 459 aaPredicted RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 XPO6Q96QU8 1125 aaKnown RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 MYADMQ96S97 322 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms