RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DEFB106AQ8N104 65 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 SPACA7Q96KW9 195 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 TRIM62Q9BVG3 475 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 SLC2A11Q9BYW1 496 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 CD93Q9NPY3 652 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 FAM207AQ9NSI2 230 aaPredicted RBP16.94■□□□□ 0.3
LSM1-201ENST00000311351 ABCB8Q9NUT2 735 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 ELOVL2Q9NXB9 296 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 STIM2Q9P246 746 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 THAP10Q9P2Z0 257 aaPredicted RBP16.94■□□□□ 0.3
LSM1-201ENST00000311351 MBD1Q9UIS9 605 aaPredicted RBP16.94■□□□□ 0.3
LSM1-201ENST00000311351 SYNJ2BP-COX16A0A087WUM0 186 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 GDF9O60383 454 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 RHOBTB1O94844 696 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 COPB1P53618 953 aaKnown RBP16.93■□□□□ 0.3
LSM1-201ENST00000311351 BPIFB4P59827 614 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 CREB5Q02930 508 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 TYRO3Q06418 890 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 ZNF234Q14588 700 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 EIF4HQ15056 248 aaKnown RBP16.93■□□□□ 0.3
LSM1-201ENST00000311351 MAP7D1Q3KQU3 841 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 DCAF6Q58WW2 860 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 ZC3H12AQ5D1E8 599 aaKnown RBP16.93■□□□□ 0.3
LSM1-201ENST00000311351 SMYD5Q6GMV2 418 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 TCEAL6Q6IPX3 200 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 ARMCX6Q7L4S7 300 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 NOP9Q86U38 636 aaKnown RBP16.93■□□□□ 0.3
LSM1-201ENST00000311351 AOPEPQ8N6M6 819 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 UCMAQ8WVF2 138 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 TCEAL3Q969E4 200 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 NOX5Q96PH1 765 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 SLC2A13Q96QE2 648 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 PDCL3Q9H2J4 239 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 SYNCQ9H7C4 482 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 FAM204AQ9H8W3 233 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 DLL3Q9NYJ7 618 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 COX16Q9P0S2 106 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 GGA2Q9UJY4 613 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 CEP83Q9Y592 693 aa16.93■□□□□ 0.3
LSM1-201ENST00000311351 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 HSF2BPO75031 334 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 DAB1O75553 588 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 APOEP02649 317 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 TPM2P07951 284 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 PRKCHP24723 683 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 CD70P32970 193 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 DHPSP49366 369 aaPredicted RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 RPS24P62847 133 aaKnown RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 NCAPHQ15003 741 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 FUT11Q495W5 492 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 PLA2G2CQ5R387 149 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 FKBP15Q5T1M5 1219 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 RNF43Q68DV7 783 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 CHST9Q7L1S5 443 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 C11orf74Q86VG3 221 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 HJURPQ8NCD3 748 aaPredicted RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 EPS8L1Q8TE68 723 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 SLC20A1Q8WUM9 679 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 DDX1Q92499 740 aaKnown RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 AZIN2Q96A70 460 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 STK33Q9BYT3 514 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 HSD3B7Q9H2F3 369 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 NLRC4Q9NPP4 1024 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 RXFP3Q9NSD7 469 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 ASNSD1Q9NWL6 643 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 DDIT4Q9NX09 232 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 LIMA1Q9UHB6 759 aaKnown RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 CDV3Q9UKY7 258 aaKnown RBP16.92■□□□□ 0.3
LSM1-201ENST00000311351 SIK3Q9Y2K2 1263 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 PCDHGA5Q9Y5G8 931 aa16.92■□□□□ 0.3
LSM1-201ENST00000311351 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 BCLAF3A2AJT9 711 aaKnown RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 LGALS16A8MUM7 142 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 PRR5-ARHGAP8B1AHC4 643 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 GFPT2O94808 682 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 GLI1P08151 1106 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 MMEP08473 750 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 PABPC1P11940 636 aaKnown RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 ZNF18P17022 549 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CDH5P33151 784 aaPredicted RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 POLR2FP61218 127 aaKnown RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 ARHGAP8P85298 464 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CDK17Q00537 523 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 EIF4EBP2Q13542 120 aaPredicted RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 ENPP2Q13822 863 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 STARD3Q14849 445 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 SYCP1Q15431 976 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 MS4A13Q5J8X5 152 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 EFHC1Q5JVL4 640 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 OTUD1Q5VV17 481 aaPredicted RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 RAP1GAP2Q684P5 730 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 KIAA1324Q6UXG2 1013 aaKnown RBP16.91■□□□□ 0.3
LSM1-201ENST00000311351 SLC26A9Q7LBE3 791 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 ADIPOR2Q86V24 386 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CHSY1Q86X52 802 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CACUL1Q86Y37 369 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 MFN1Q8IWA4 741 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 TMEFF1Q8IYR6 380 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 CFAP52Q8N1V2 620 aa16.91■□□□□ 0.3
LSM1-201ENST00000311351 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms