RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CDO1Q16878 200 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 CCDC14Q49A88 953 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 BRMS1LQ5PSV4 323 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 OTUD1Q5VV17 481 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 STRADAQ7RTN6 431 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 ADGRG2Q8IZP9 1017 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 TTC8Q8TAM2 541 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 SHDQ96IW2 340 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 BTN2A3PQ96KV6 586 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 ARHGEF3Q9NR81 526 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 HEBP1Q9NRV9 189 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 PIGVQ9NUD9 493 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 PIAS3Q9Y6X2 628 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 COL4A2P08572 1712 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 FAM86C2PA6NEL3 165 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 TMEM191CA6NGB0 347 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 SOWAHDA6NJG2 315 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 ACSL4O60488 711 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 CYP17A1P05093 508 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 TMEM253P0C7T8 217 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 PSMA2P25787 234 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 CXCR3P49682 368 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 MLLT6P55198 1093 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 PRKCQQ04759 706 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 EIF4EBP2Q13542 120 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 DHCR24Q15392 516 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 C15orf59Q2T9L4 293 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 LY6G5CQ5SRR4 150 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 ADGRF1Q5T601 910 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 TRIM67Q6ZTA4 783 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 SIX5Q8N196 739 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 CPXM2Q8N436 756 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 FAM172AQ8WUF8 416 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 MSANTD3Q96H12 275 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 NUP85Q9BW27 656 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 PACSIN1Q9BY11 444 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 WDCPQ9H6R7 721 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 SPHK2Q9NRA0 654 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 CTTNBP2NLQ9P2B4 639 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 INTUQ9ULD6 942 aa19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 EPN1Q9Y6I3 576 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-216ENST00000626660 TECTAO75443 2155 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 EIF3CLB5ME19 914 aaKnown RBP19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 NRDCO43847 1150 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 ENDOD1O94919 500 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 NDUFA10O95299 355 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 LCA5LO95447 670 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 CYBBP04839 570 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 ADH5P11766 374 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 MAGEA1P43355 309 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 GAD2Q05329 585 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 ANO4Q32M45 955 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 C1orf228Q6PIY5 440 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 RHBDF2Q6PJF5 856 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 TPRG1Q6ZUI0 275 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 BNIPLQ7Z465 357 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 RALGPS2Q86X27 583 aaPredicted RBP19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 FNIP1Q8TF40 1166 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 EXOC4Q96A65 974 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 ARHGEF26Q96DR7 871 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 EIF3CQ99613 913 aaKnown RBP19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 STOML2Q9UJZ1 356 aa19.83■□□□□ 0.77
SQSTM1-216ENST00000626660 KCNU1A8MYU2 1149 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 MAN2B1O00754 1011 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 CCP110O43303 1012 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 VCPP55072 806 aaKnown RBP19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 TPGS1Q6ZTW0 290 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 FAM131BQ86XD5 332 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 TMEM25Q86YD3 366 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 FAM217AQ8IXS0 508 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 CCDC112Q8NEF3 446 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 CENPIQ92674 756 aaPredicted RBP19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 BBS2Q9BXC9 721 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 ADAM33Q9BZ11 813 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 CALCOCO1Q9P1Z2 691 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 UVRAGQ9P2Y5 699 aa19.82■□□□□ 0.76
SQSTM1-216ENST00000626660 OTOL1A6NHN0 477 aaPredicted RBP19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 SPECC1L-ADORA2AF8WAN1 911 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 RNF8O76064 485 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 CTHP32929 405 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 GJA4P35212 333 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 SOX9P48436 509 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 ARL13BQ3SXY8 428 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 RAD9BQ6WBX8 426 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 CHSY1Q86X52 802 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 TMEM139Q8IV31 216 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 ZNF564Q8TBZ8 553 aaPredicted RBP19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 NCAPGQ9BPX3 1015 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 IRX2Q9BZI1 471 aaPredicted RBP19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 TRIM7Q9C029 511 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 TKTL2Q9H0I9 626 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 MFSD1Q9H3U5 465 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 ARHGEF38Q9NXL2 777 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 MARK1Q9P0L2 795 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 ANAPC7Q9UJX3 599 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 MRPS17Q9Y2R5 130 aaKnown RBP19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 PCDHA13Q9Y5I0 950 aa19.81■□□□□ 0.76
SQSTM1-216ENST00000626660 TYW5A2RUC4 315 aaKnown RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 KRBA1A5PL33 1030 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 TMEM221A6NGB7 291 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms