RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SLC2A11Q9BYW1 496 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 SYNCQ9H7C4 482 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 CLEC4EQ9ULY5 219 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 FRYLO94915 3013 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 LGALS16A8MUM7 142 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 GFRA2O00451 464 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ACSL4O60488 711 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ERBB2P04626 1255 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 GLI1P08151 1106 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 HOXB2P14652 356 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ZNF18P17022 549 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 HOXD9P28356 352 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-206ENST00000579558 POLR2FP61218 127 aaKnown RBP24.85■■□□□ 1.57
SHMT1-206ENST00000579558 TAF5Q15542 800 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 GEN1Q17RS7 908 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 PTPN20Q4JDL3 420 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 EFHC1Q5JVL4 640 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 TAF3Q5VWG9 929 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 SDE2Q6IQ49 451 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 FAM183BPQ6ZVS7 135 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ANKS1BQ7Z6G8 1248 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 KBTBD6Q86V97 674 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 TMEM35BQ8NCS4 154 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 AZIN2Q96A70 460 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ACOX2Q99424 681 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 ASNSD1Q9NWL6 643 aa24.85■■□□□ 1.57
SHMT1-206ENST00000579558 BCCIPQ9P287 314 aaKnown RBP eCLIP24.85■■□□□ 1.57
SHMT1-206ENST00000579558 SPTBN4Q9H254 2564 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 GOLGA6L7A0A1B0GV03 622 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 TCRBV21S2A2A0A5A6 115 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 SYCP1Q15431 976 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 USP39Q53GS9 565 aaKnown RBP24.84■■□□□ 1.57
SHMT1-206ENST00000579558 DCAF6Q58WW2 860 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 FAM133BQ5BKY9 247 aaKnown RBP24.84■■□□□ 1.57
SHMT1-206ENST00000579558 RFWD3Q6PCD5 774 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 GPR161Q8N6U8 529 aaKnown RBP24.84■■□□□ 1.57
SHMT1-206ENST00000579558 HMGB4Q8WW32 186 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 SLC39A13Q96H72 371 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 PCMTD1Q96MG8 357 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-206ENST00000579558 SIK3Q9Y2K2 1263 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 ZNF292O60281 2723 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 SPAG17Q6Q759 2223 aa24.84■■□□□ 1.57
SHMT1-206ENST00000579558 EPHB6O15197 1021 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 IRAK2O43187 625 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 HSF2BPO75031 334 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 TRUB2O95900 331 aaKnown RBP24.83■■□□□ 1.57
SHMT1-206ENST00000579558 MOCS2O96007 188 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-206ENST00000579558 SLC6A4P31645 630 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 SGSHP51688 502 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 OLFML1Q6UWY5 402 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 NOP9Q86U38 636 aaKnown RBP24.83■■□□□ 1.57
SHMT1-206ENST00000579558 DEFB106AQ8N104 65 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 UCMAQ8WVF2 138 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 DDX1Q92499 740 aaKnown RBP24.83■■□□□ 1.57
SHMT1-206ENST00000579558 SLC2A13Q96QE2 648 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 DDX50Q9BQ39 737 aaKnown RBP24.83■■□□□ 1.57
SHMT1-206ENST00000579558 HSD3B7Q9H2F3 369 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 NLRC4Q9NPP4 1024 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 CACNA2D2Q9NY47 1150 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 INVSQ9Y283 1065 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 DAAM1Q9Y4D1 1078 aa24.83■■□□□ 1.57
SHMT1-206ENST00000579558 DCLK1O15075 740 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 GRAP2O75791 330 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 GFPT2O94808 682 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 IGLV3-25P01717 112 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 APOEP02649 317 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 CDH5P33151 784 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-206ENST00000579558 PITX1P78337 314 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-206ENST00000579558 CDK17Q00537 523 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 UBXN1Q04323 297 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 SPEM2Q0P670 501 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 PIK3R6Q5UE93 754 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 NADSYN1Q6IA69 706 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 PGBD3Q8N328 593 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 EPS8L1Q8TE68 723 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 SPAG5Q96R06 1193 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 BPIFA3Q9BQP9 254 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 IRX2Q9BZI1 471 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-206ENST00000579558 FAM204AQ9H8W3 233 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 USP18Q9UMW8 372 aa24.82■■□□□ 1.56
SHMT1-206ENST00000579558 LRRC10BA6NIK2 292 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 TBL1XO60907 577 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 GBP1P32455 592 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 SLC6A3Q01959 620 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 PLK5Q496M5 336 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 ZC3H12AQ5D1E8 599 aaKnown RBP24.81■■□□□ 1.56
SHMT1-206ENST00000579558 NEK11Q8NG66 645 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 LOXL4Q96JB6 756 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 ZC3H10Q96K80 434 aaKnown RBP24.81■■□□□ 1.56
SHMT1-206ENST00000579558 GABRG3Q99928 467 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 CIPCQ9C0C6 399 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 PARD6AQ9NPB6 346 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 ELOVL2Q9NXB9 296 aa24.81■■□□□ 1.56
SHMT1-206ENST00000579558 A0A1W2PQF6 199 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 DAB1O75553 588 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 LSM8O95777 96 aaKnown RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 MMEP08473 750 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 ATP1A3P13637 1013 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 SOX5P35711 763 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 JAM2P57087 298 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms