RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ADGRF1Q5T601 910 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 RAD9BQ6WBX8 426 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 Q6ZNB5 142 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 TMEM139Q8IV31 216 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 CCDC117Q8IWD4 279 aaPredicted RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 LRRC8AQ8IWT6 810 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 CPXM2Q8N436 756 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 NTAN1Q96AB6 310 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 SHDQ96IW2 340 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 LRRC3BQ96PB8 259 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 PACSIN1Q9BY11 444 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 EBF3Q9H4W6 596 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 C8orf33Q9H7E9 229 aaPredicted RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 ECT2Q9H8V3 914 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 ARHGEF3Q9NR81 526 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 PIGVQ9NUD9 493 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 WNT16Q9UBV4 365 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 STOML2Q9UJZ1 356 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 AGO1Q9UL18 857 aaKnown RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 PCDHA13Q9Y5I0 950 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 BDP1A6H8Y1 2624 aa10.46□□□□□ -0.74
USP3-216ENST00000559873 CUL9Q8IWT3 2517 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 KCNU1A8MYU2 1149 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 F5H5T6 163 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 ARNTLO00327 626 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 MAN2B1O00754 1011 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 SCAMP3O14828 347 aaKnown RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 PRPSAP2O60256 369 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 MTA2O94776 668 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 ENDOD1O94919 500 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 ADH5P11766 374 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 GLULP15104 373 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 VAV2P52735 878 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 PITX1P78337 314 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 PRKCQQ04759 706 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 SIGLEC14Q08ET2 396 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 KIF5AQ12840 1032 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 EIF4EBP2Q13542 120 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 IFI16Q16666 785 aaKnown RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 C15orf59Q2T9L4 293 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 ANO4Q32M45 955 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 MPPE1Q53F39 396 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 EFHC2Q5JST6 749 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 RABGAP1LQ5R372 815 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 TTC39BQ5VTQ0 682 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 OTUD1Q5VV17 481 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 TRIM68Q6AZZ1 485 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 TRNP1Q6NT89 227 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 LRRC31Q6UY01 552 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 BNIPLQ7Z465 357 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 RALGPS2Q86X27 583 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 CHSY1Q86X52 802 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 FAM131BQ86XD5 332 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 DNAAF5Q86Y56 855 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 HJURPQ8NCD3 748 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 RIN3Q8TB24 985 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 CENPIQ92674 756 aaPredicted RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 ARHGEF26Q96DR7 871 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 ZFYVE19Q96K21 471 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 XPO6Q96QU8 1125 aaKnown RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 TSGA10Q9BZW7 698 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 TKTL2Q9H0I9 626 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 SPHK2Q9NRA0 654 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 ARHGEF38Q9NXL2 777 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 GTSE1Q9NYZ3 720 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 MARK1Q9P0L2 795 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 MRPS17Q9Y2R5 130 aaKnown RBP10.45□□□□□ -0.74
USP3-216ENST00000559873 PIAS3Q9Y6X2 628 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 C5orf42Q9H799 3197 aa10.45□□□□□ -0.74
USP3-216ENST00000559873 A0A0A6YYK5 440 aaPredicted RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 TNFRSF10AO00220 468 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 HOXC11O43248 304 aaPredicted RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 GREM1O60565 184 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 PROSCO94903 275 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 KLKB1P03952 638 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 CYP17A1P05093 508 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 CCDC175P0C221 793 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 ARSAP15289 507 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 MAN1A1P33908 653 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 PCK1P35558 622 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 EIF2DP41214 584 aaKnown RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 ARHGAP25P42331 645 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 NOP2P46087 812 aaKnown RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 HDAC4P56524 1084 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 ZXDAP98168 799 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 TNK2Q07912 1038 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 SCAPQ12770 1279 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 TCEAL1Q15170 157 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 DHCR24Q15392 516 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 MLF2Q15773 248 aaPredicted RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 HADHQ16836 314 aaKnown RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 SCYL2Q6P3W7 929 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 NUDT18Q6ZVK8 323 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 SLFN11Q7Z7L1 901 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 SUGP1Q8IWZ8 645 aaKnown RBP10.44□□□□□ -0.74
USP3-216ENST00000559873 FAM217AQ8IXS0 508 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 NIPA2Q8N8Q9 360 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 ACRBPQ8NEB7 543 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 SLC35G2Q8TBE7 412 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms