RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HSF5Q4G112 596 aaPredicted RBP11.23□□□□□ -0.61
USP3-206ENST00000558157 EPC2Q52LR7 807 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 PRAMEF19Q5SWL8 479 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SH2D5Q6ZV89 423 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 TRIM50Q86XT4 487 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 TICAM1Q8IUC6 712 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 RIN3Q8TB24 985 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 KCNK16Q96T55 309 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 PCDH9Q9HC56 1237 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 AGPAT3Q9NRZ7 376 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 C2orf71A6NGG8 1288 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SFI1A8K8P3 1242 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 E7ESA3 106 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CYP26A1O43174 497 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 ADCY6O43306 1168 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 TRPA1O75762 1119 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 ESRRBO95718 433 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SMPD1P17405 629 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 GLRA2P23416 452 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 GPS1Q13098 491 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 FAM160B1Q5W0V3 765 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 NIPAL1Q6NVV3 410 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 LPCAT2Q7L5N7 544 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 ARID3BQ8IVW6 561 aaPredicted RBP11.23□□□□□ -0.61
USP3-206ENST00000558157 FBXW8Q8N3Y1 598 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 LZTR1Q8N653 840 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CMTM5Q96DZ9 223 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CCDC68Q9H2F9 335 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 MKS1Q9NXB0 559 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 RNF186Q9NXI6 227 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 SIRPGQ9P1W8 387 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 CHORDC1Q9UHD1 332 aaPredicted RBP11.23□□□□□ -0.61
USP3-206ENST00000558157 CDH7Q9ULB5 785 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 GABRQQ9UN88 632 aa11.23□□□□□ -0.61
USP3-206ENST00000558157 THRAP10827 490 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 AQP5P55064 265 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 MFAP3P55082 362 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 KCNA1Q09470 495 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 ZBTB17Q13105 803 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 TFDP1Q14186 410 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 XKR3Q5GH77 459 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 DEPDC1Q5TB30 811 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 NEPROQ6NW34 567 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 DCDC5Q6ZRR9 648 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 ARHGEF19Q8IW93 802 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 DAW1Q8N136 415 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.22□□□□□ -0.61
USP3-206ENST00000558157 SHC3Q92529 594 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 E2F7Q96AV8 911 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 CEP170P1Q96L14 293 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 SLC2A11Q9BYW1 496 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 ALG13Q9NP73 1137 aaKnown RBP11.22□□□□□ -0.61
USP3-206ENST00000558157 SELENONQ9NZV5 590 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 NUB1Q9Y5A7 615 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 IKBKGQ9Y6K9 419 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 EMSYQ7Z589 1322 aa11.22□□□□□ -0.61
USP3-206ENST00000558157 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 E5RJQ4 531 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 SNNO75324 88 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 SPAG6O75602 509 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 PROSCO94903 275 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 OCM2P0CE71 109 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 OCMP0CE72 109 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 GSTT2P0CG29 244 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 GSTT2BP0CG30 244 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 RBP3P10745 1247 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 STAT5BP51692 787 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ALDH18A1P54886 795 aaKnown RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 KCNC4Q03721 635 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ITGA7Q13683 1181 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 LAMC2Q13753 1193 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 LLGL1Q15334 1064 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 MTERF2Q49AM1 385 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 TEX44Q53QW1 395 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 MYCT1Q8N699 235 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 DDHD1Q8NEL9 900 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 TSPAN14Q8NG11 270 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 EFHD2Q96C19 240 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 LRGUKQ96M69 825 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 RILPQ96NA2 401 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ACAP3Q96P50 834 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 CFHR5Q9BXR6 569 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 SMYD3Q9H7B4 428 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 PARVGQ9HBI0 331 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 CYP26B1Q9NR63 512 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 CASP8AP2Q9UKL3 1982 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 COPEO14579 308 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 IGHA2P01877 340 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ITGAVP06756 1048 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 C6orf222P0C671 652 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 ZNF865P0CJ78 1059 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 COL6A2P12110 1019 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 CYP11B1P15538 503 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ENTPD1P49961 510 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ERFP50548 548 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 TMPRSS15P98073 1019 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 SLC25A3Q00325 362 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 SP3Q02447 781 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 PRKCZQ05513 592 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms