RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RGL4Q8IZJ4 473 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 FMR1NBQ8N0W7 255 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 UBR7Q8N806 425 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 CADM4Q8NFZ8 388 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 DDI1Q8WTU0 396 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 DNASE2BQ8WZ79 361 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 NDRG1Q92597 394 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 SLC35C1Q96A29 364 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 TOE1Q96GM8 510 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 GSDMAQ96QA5 445 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 GDPD2Q9HCC8 539 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 STOML2Q9UJZ1 356 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 HBS1LQ9Y450 684 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 KCNJ18B7U540 433 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 O00370 1275 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 TIMM44O43615 452 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 HYAL3O43820 417 aaPredicted RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 LATS1O95835 1130 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 C7P10643 843 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 NCAM1P13591 858 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 MAOBP27338 520 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 OXTRP30559 389 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 HARS2P49590 506 aaKnown RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 TPMTP51580 245 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 PMS1P54277 932 aaKnown RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 ZNF445P59923 1031 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 YWHAEP62258 255 aaKnown RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 FAM193AP78312 1265 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 ADIGQ0VDE8 80 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 GRIK2Q13002 908 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 PKDCCQ504Y2 493 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 ANKRD40Q6AI12 368 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 SCML4Q8N228 414 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 SPATA20Q8TB22 786 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 SORCS1Q8WY21 1168 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 KCTD13Q8WZ19 329 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 PRCCQ92733 491 aaPredicted RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 SIPA1Q96FS4 1042 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 IPO9Q96P70 1041 aaKnown RBP11.86□□□□□ -0.51
VPS28-214ENST00000531032 TSG101Q99816 390 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 GPR174Q9BXC1 333 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 ZDHHC5Q9C0B5 715 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 CIPCQ9C0C6 399 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 LRRC4Q9HBW1 653 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 HESX1Q9UBX0 185 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 MSRB2Q9Y3D2 182 aa11.86□□□□□ -0.51
VPS28-214ENST00000531032 A0A1B0GTW7 788 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 YJEFN3A6XGL0 299 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 MEI4A8MW99 385 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 E7ENQ6 273 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 H0Y626 953 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 TRIM16O95361 564 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 SETSIPP0DME0 302 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 VDRP11473 427 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 CD19P15391 556 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 TBXAS1P24557 533 aaPredicted RBP11.85□□□□□ -0.51
VPS28-214ENST00000531032 HLA-FP30511 346 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 LRRC63Q05C16 580 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 ZNF423Q2M1K9 1284 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 MPPE1Q53F39 396 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 ADGRF1Q5T601 910 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 BSPRYQ5W0U4 402 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 SERPINA13PQ6UXR4 307 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 SIX6OS1Q8N1H7 587 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.85□□□□□ -0.514e-6■□□□□ 11.3
VPS28-214ENST00000531032 RNF139Q8WU17 664 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 EDEM1Q92611 657 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 TMEM245Q9H330 911 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 CNGB3Q9NQW8 809 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 ARMCX3Q9UH62 379 aaPredicted RBP11.85□□□□□ -0.51
VPS28-214ENST00000531032 SFMBT1Q9UHJ3 866 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 KLK13Q9UKR3 277 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 KIAA1257Q9ULG3 409 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 FAM208BQ5VWN6 2430 aa11.85□□□□□ -0.51
VPS28-214ENST00000531032 FAM221BA6H8Z2 402 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 TRIM49BA6NDI0 452 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 METTL12A8MUP2 240 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 MSI1O43347 362 aaKnown RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 SH3BP5O60239 455 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 IGLV3-27P01718 113 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 EPHX1P07099 455 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 PAEPP09466 180 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 RDXP35241 583 aaKnown RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 DAOAP59103 153 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 CAMK2GQ13555 558 aaPredicted RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 DCAF12L1Q5VU92 463 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 MSANTD2Q6P1R3 559 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 LCLAT1Q6UWP7 414 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 RAB44Q7Z6P3 723 aaPredicted RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 KIAA0907Q7Z7F0 614 aaPredicted RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 ZCCHC9Q8N567 271 aaKnown RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 ENGASEQ8NFI3 743 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 OR2T3Q8NH03 318 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 UBA3Q8TBC4 463 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 WFIKKN2Q8TEU8 576 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 TFAP2BQ92481 460 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 CAMK1GQ96NX5 476 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 NUP58Q9BVL2 599 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 GTPBP4Q9BZE4 634 aaKnown RBP11.84□□□□□ -0.51
VPS28-214ENST00000531032 PCED1AQ9H1Q7 454 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms