RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CNBD2Q96M20 576 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TRIM15Q9C019 465 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 PRDM12Q9H4Q4 367 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CAAP1Q9H8G2 361 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 MAN1C1Q9NR34 630 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 RHBDL2Q9NX52 303 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 SYNDIG1LA6NDD5 238 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ERI2A8K979 691 aaKnown RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 FAM155BO75949 473 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GOT1P17174 413 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KPNB1Q14974 876 aaKnown RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TAF5Q15542 800 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 MAPRE2Q15555 327 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 PPP1R26Q5T8A7 1209 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 BBS12Q6ZW61 710 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CATSPER2Q96P56 530 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TBCBQ99426 244 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ADNPQ9H2P0 1102 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KCPQ6ZWJ8 1503 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 SNED1Q8TER0 1413 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 MROH7Q68CQ1 1323 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CXCL11O14625 94 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 FARP2O94887 1054 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 LYPLA2O95372 231 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 F9P00740 461 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 PROCP04070 461 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CFHP08603 1231 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KRT16P08779 473 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ODC1P11926 461 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ZNF143P52747 638 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 BST1Q10588 318 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CRELD2Q6UXH1 353 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 RIOX2Q8IUF8 465 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TNS4Q8IZW8 715 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KLHL23Q8NBE8 558 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 CYGBQ8WWM9 190 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KLRG1Q96E93 195 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 APOBEC3GQ9HC16 384 aaKnown RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GPAMQ9HCL2 828 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 NOCTQ9UK39 431 aaKnown RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ATXN2Q99700 1313 aaKnown RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 DNM1LO00429 736 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TIMM44O43615 452 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GP5P40197 560 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 SERPINB8P50452 374 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 VEPH1Q14D04 833 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 THEMIS2Q5TEJ8 643 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 FAM43BQ6ZT52 329 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GANCQ8TET4 914 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TFAP2BQ92481 460 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TSPAN17Q96FV3 270 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GCNAQ96QF7 691 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 GPR63Q9BZJ6 419 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 ABHD16BQ9H3Z7 469 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 RNPEPQ9H4A4 650 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 TAGLN3Q9UI15 199 aa12.01□□□□□ -0.49
SYNPO-204ENST00000519664 KNL1Q8NG31 2342 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TCRBV9S1A1TA0A576 114 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 SYCE1LA8MT33 242 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 PRRG1O14668 218 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TRUB2O95900 331 aaKnown RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 C4BPAP04003 597 aaKnown RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 PDPK2PQ6A1A2 396 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TRABD2AQ86V40 505 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 C12orf56Q8IXR9 622 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 BTBD10Q9BSF8 475 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 OSBPL7Q9BZF2 842 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TKTL2Q9H0I9 626 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TNFSF13BQ9Y275 285 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 SNX13Q9Y5W8 968 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 SDK1Q7Z5N4 2213 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 CCR1P32246 355 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 CCNHP51946 323 aaPredicted RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 NAGLUP54802 743 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 ACVR2BQ13705 512 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 PTRHD1Q6GMV3 140 aaKnown RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 ILDR2Q71H61 639 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 LINC00523Q86TU6 105 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TLK2Q86UE8 772 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 TDRD5Q8NAT2 981 aaKnown RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 CALML6Q8TD86 181 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 FBXO32Q969P5 355 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 C18orf25Q96B23 403 aaPredicted RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 CENPTQ96BT3 561 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 GLT1D1Q96MS3 346 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 ARHGAP28Q9P2N2 729 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 PKP3Q9Y446 797 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 SLC12A8A0AV02 714 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 LRCH4O75427 683 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 ACADSP16219 412 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 CYLC2Q14093 348 aaPredicted RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 ZNF470Q6ECI4 717 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 OVOS1Q6IE37 1185 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 C16orf89Q6UX73 402 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 CXCL17Q6UXB2 119 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 DCP1BQ8IZD4 617 aaKnown RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 SPATA6LQ8N4H0 392 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 SENP8Q96LD8 212 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 GBA2Q9HCG7 927 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms