RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 NCAM1P13591 858 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 BCKDHBP21953 392 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 HOXD9P28356 352 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 SLC6A4P31645 630 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 P2RY2P41231 377 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 SGSHP51688 502 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 TBX4P57082 545 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 YWHAZP63104 245 aaKnown RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PITX1P78337 314 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 ARHGAP8P85298 464 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PTK2Q05397 1052 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 RING1Q06587 406 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 ENPP2Q13822 863 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 SF3A2Q15428 464 aaKnown RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 MAP7D1Q3KQU3 841 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PIK3R6Q5UE93 754 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 NADSYN1Q6IA69 706 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 SDE2Q6IQ49 451 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 RFWD3Q6PCD5 774 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PRR23CQ6ZRP0 262 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 TRMT11Q7Z4G4 463 aaKnown RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 SLC47A2Q86VL8 602 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 FAM71AQ8IYT1 594 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 CHPFQ8IZ52 775 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 DQX1Q8TE96 717 aaKnown RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 HMGB4Q8WW32 186 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 MYEOVQ96EZ4 313 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 FCRL2Q96LA5 508 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 GBP4Q96PP9 640 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 NAA15Q9BXJ9 866 aaKnown RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 VPS16Q9H269 839 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 RXFP3Q9NSD7 469 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 FANCLQ9NW38 375 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 CACNA2D2Q9NY47 1150 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 THAP10Q9P2Z0 257 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-215ENST00000519474 NFE2L3Q9Y4A8 694 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 KIAA1549LQ6ZVL6 1849 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 RALGAPA1Q6GYQ0 2036 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 BCLAF3A2AJT9 711 aaKnown RBP9.72□□□□□ -0.85
HDAC3-215ENST00000519474 LRRC10BA6NIK2 292 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 HOXB2P14652 356 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 HLA-FP30511 346 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 KRT9P35527 623 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 FAM133BQ5BKY9 247 aaKnown RBP9.72□□□□□ -0.85
HDAC3-215ENST00000519474 CDKAL1Q5VV42 579 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 PMS2CLQ68D20 193 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 RNF43Q68DV7 783 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 PGBD3Q8N328 593 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 ADAM32Q8TC27 787 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 GOLGA1Q92805 767 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 FAM149B1Q96BN6 582 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 ERLEC1Q96DZ1 483 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 PPP1R13BQ96KQ4 1090 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 LMLNQ96KR4 655 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 CPXM1Q96SM3 734 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 SMOC1Q9H4F8 434 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 POPDC2Q9HBU9 364 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 TAB2Q9NYJ8 693 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 TLR6Q9Y2C9 796 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 PCDHGA5Q9Y5G8 931 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 RAD54BQ9Y620 910 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 STON1Q9Y6Q2 735 aa9.72□□□□□ -0.85
HDAC3-215ENST00000519474 DMDP11532 3685 aa9.71□□□□□ -0.85
HDAC3-215ENST00000519474 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 PES1O00541 588 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 CAPN9O14815 690 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 TM4SF5O14894 197 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SART1O43290 800 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 CAVIN2O95810 425 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 TRUB2O95900 331 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 IGLV3-25P01717 112 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 UCHL3P15374 230 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SDHBP21912 280 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 EEF1GP26641 437 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 GBP1P32455 592 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 IL12RB1P42701 662 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SLC11A2P49281 568 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 BPIFB4P59827 614 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 LMNB2Q03252 620 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 PDCLQ13371 301 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 NNTQ13423 1086 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF234Q14588 700 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 KRT31Q15323 416 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 ELF2Q15723 593 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 ZC3H12AQ5D1E8 599 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 EFHC1Q5JVL4 640 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 MPP7Q5T2T1 576 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 NUGGCQ68CJ6 796 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 OR6B2Q6IFH4 312 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SASS6Q6UVJ0 657 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 C11orf57Q6ZUT1 292 aaPredicted RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 ERMP1Q7Z2K6 904 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 ADIPOR2Q86V24 386 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 PASD1Q8IV76 773 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 DEFB106AQ8N104 65 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 FIBINQ8TAL6 211 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 WFDC5Q8TCV5 224 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SORCS1Q8WY21 1168 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 DDX1Q92499 740 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 MRGPRX1Q96LB2 322 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms