RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 CFAP73A6NFT4 308 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RRN3P2A6NIE6 340 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 YJEFN3A6XGL0 299 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 E7ENQ6 273 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RFPL1O75677 317 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ZNF865P0CJ78 1059 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 CCNB1P14635 433 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 GM2AP17900 193 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 PTPN9P43378 593 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 FYB2Q5VWT5 728 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ZNF467Q7Z7K2 595 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 UNC93AQ86WB7 457 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 CDKL3Q8IVW4 592 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 GBP7Q8N8V2 638 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 COLGALT1Q8NBJ5 622 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 USP6NLQ92738 828 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 GRAMD1AQ96CP6 724 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RTP4Q96DX8 246 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 FAXDC2Q96IV6 333 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 QKIQ96PU8 341 aaKnown RBP eCLIP12.85□□□□□ -0.353e-41■■■■■ 75.6
HMGN1-220ENST00000492280 ULBP1Q9BZM6 244 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 CRTAC1Q9NQ79 661 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ACSS2Q9NR19 701 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ARL8BQ9NVJ2 186 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 MIOSQ9NXC5 875 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 LOC102724159A0A0B4J2E5 919 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 SMIM35A0A1B0GVV1 85 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 F8W810 466 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 C6orf222P0C671 652 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 USP17L7P0C7H9 530 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 SETSIPP0DME0 302 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ARL4AP40617 200 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 CLCNKBP51801 687 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 TKTL1P51854 596 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 PWP2Q15269 919 aaKnown RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RFWD3Q6PCD5 774 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RGS9BPQ6ZS82 235 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RFX8Q6ZV50 586 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 ANKRD23Q86SG2 305 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 NDUFAF2Q8N183 169 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 RNF139Q8WU17 664 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 P2RY11Q96G91 374 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 PRDM12Q9H4Q4 367 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 UBP1Q9NZI7 540 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 NKX1-2Q9UD57 310 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 FZD10Q9ULW2 581 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 MYL2P10916 166 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 MATKP42679 507 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 NBPF20Q3BBV1 942 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TTC39BQ5VTQ0 682 aaPredicted RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 CLNKQ7Z7G1 428 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 SIX6OS1Q8N1H7 587 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 CRYBG2Q8N1P7 616 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 GPATCH11Q8N954 259 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TTC8Q8TAM2 541 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TFB1MQ8WVM0 346 aaKnown RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 CENPIQ92674 756 aaPredicted RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 AZIN2Q96A70 460 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 ZNF560Q96MR9 790 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 MIPEPQ99797 713 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TBC1D10AQ9BXI6 508 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 KCNK13Q9HB14 408 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 LRRC4Q9HBW1 653 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 SYBUQ9NX95 663 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 DDX43Q9NXZ2 648 aaKnown RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 GOLGA8TH3BQL2 631 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TM9SF1O15321 606 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 LYPLA1O75608 230 aaPredicted RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 PGK1P00558 417 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 NPR3P17342 541 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 PTPN1P18031 435 aaKnown RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 SCNN1GP51170 649 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 ADAM17P78536 824 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 TMPRSS15P98073 1019 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 BST1Q10588 318 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 CHI3L2Q15782 390 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 CXCL17Q6UXB2 119 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 LONP2Q86WA8 852 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 PGBD4Q96DM1 585 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 OXNAD1Q96HP4 312 aaPredicted RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 EBNA1BP2Q99848 306 aaKnown RBP12.84□□□□□ -0.35
HMGN1-220ENST00000492280 RRAGCQ9HB90 399 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 ZNF358Q9NW07 568 aa12.84□□□□□ -0.35
HMGN1-220ENST00000492280 NDC80O14777 642 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 ENTPD5O75356 428 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 FYNP06241 537 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 SNRPAP09012 282 aaKnown RBP12.83□□□□□ -0.35
HMGN1-220ENST00000492280 TROVE2P10155 538 aaKnown RBP eCLIP12.83□□□□□ -0.35
HMGN1-220ENST00000492280 ERVK-10P10266 1014 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 ALADP13716 330 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 DESP17661 470 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 ZBTB16Q05516 673 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 SLC18A2Q05940 514 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 PPP2R5DQ14738 602 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 RASA2Q15283 850 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 PPM1JQ5JR12 505 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 ARID3BQ8IVW6 561 aaPredicted RBP12.83□□□□□ -0.35
HMGN1-220ENST00000492280 NPWQ8N729 165 aa12.83□□□□□ -0.35
HMGN1-220ENST00000492280 C2orf69Q8N8R5 385 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms