RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 SPHK2Q9NRA0 654 aa16.35■□□□□ 0.21
C9orf3-219ENST00000488186 ARNTLO00327 626 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 NRDCO43847 1150 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 ACSL4O60488 711 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 GREM1O60565 184 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 IGLV3-25P01717 112 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 PSMA2P25787 234 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 RDXP35241 583 aaKnown RBP16.34■□□□□ 0.21
C9orf3-219ENST00000488186 MAGEA1P43355 309 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 PTPN9P43378 593 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 NUBP1P53384 320 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 RPL7AP62424 266 aaKnown RBP16.34■□□□□ 0.21
C9orf3-219ENST00000488186 C15orf59Q2T9L4 293 aaPredicted RBP16.34■□□□□ 0.21
C9orf3-219ENST00000488186 CCDC14Q49A88 953 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 LY6G5CQ5SRR4 150 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 ADGRF1Q5T601 910 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 C1orf228Q6PIY5 440 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 ZNF852Q6ZMS4 543 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 FAM172AQ8WUF8 416 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 NT5C3BQ969T7 300 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 AZIN2Q96A70 460 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 PGAP3Q96FM1 320 aaPredicted RBP16.34■□□□□ 0.21
C9orf3-219ENST00000488186 MSANTD3Q96H12 275 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 SLC39A13Q96H72 371 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 BTN2A3PQ96KV6 586 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 LRFN3Q9BTN0 628 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 CTTNBP2NLQ9P2B4 639 aa16.34■□□□□ 0.21
C9orf3-219ENST00000488186 MRPS17Q9Y2R5 130 aaKnown RBP16.34■□□□□ 0.21
C9orf3-219ENST00000488186 TCRBV5S1A1TA0A578 114 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TYW5A2RUC4 315 aaKnown RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 SPECC1L-ADORA2AF8WAN1 911 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TSPAN3O60637 253 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 IGLV3-27P01718 113 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 CYP17A1P05093 508 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 ADH5P11766 374 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TFE3P19532 575 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 CLCN5P51795 746 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 ZNF143P52747 638 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 STARD6P59095 220 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 PPP2R5DQ14738 602 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 ARL13BQ3SXY8 428 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 BRMS1LQ5PSV4 323 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 PPP1R15BQ5SWA1 713 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 SCYL2Q6P3W7 929 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 RHBDF2Q6PJF5 856 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 STRADAQ7RTN6 431 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 RALGPS2Q86X27 583 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TMEM25Q86YD3 366 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 CCDC117Q8IWD4 279 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 DDI1Q8WTU0 396 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 FAM3CQ92520 227 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 XPO6Q96QU8 1125 aaKnown RBP16.33■□□□□ 0.2
C9orf3-219ENST00000488186 CNPY3Q9BT09 278 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 NUP85Q9BW27 656 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 BBS2Q9BXC9 721 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TKTL2Q9H0I9 626 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 PIGVQ9NUD9 493 aa16.33■□□□□ 0.2
C9orf3-219ENST00000488186 TMEM191CA6NGB0 347 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 SOWAHDA6NJG2 315 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 KCNU1A8MYU2 1149 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 NEDD8-MDP1E9PL57 170 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 TRDMT1O14717 391 aaKnown RBP16.32■□□□□ 0.2
C9orf3-219ENST00000488186 RNF8O76064 485 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 CYP1A2P05177 515 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 TMEM253P0C7T8 217 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 GJA4P35212 333 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 SOX9P48436 509 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 CXCR3P49682 368 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 VCPP55072 806 aaKnown RBP16.32■□□□□ 0.2
C9orf3-219ENST00000488186 PREPLQ4J6C6 727 aaPredicted RBP16.32■□□□□ 0.2
C9orf3-219ENST00000488186 MPPE1Q53F39 396 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 TRNP1Q6NT89 227 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 CHSY1Q86X52 802 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 FAM131BQ86XD5 332 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 CPXM2Q8N436 756 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 FBXL6Q8N531 539 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 FLCNQ8NFG4 579 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 BHMTQ93088 406 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 PBXIP1Q96AQ6 731 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 TMA16Q96EY4 203 aaKnown RBP16.32■□□□□ 0.2
C9orf3-219ENST00000488186 OSBPL6Q9BZF3 934 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 SIK2Q9H0K1 926 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 KCNH6Q9H252 994 aa16.32■□□□□ 0.2
C9orf3-219ENST00000488186 EPN1Q9Y6I3 576 aaPredicted RBP16.32■□□□□ 0.2
C9orf3-219ENST00000488186 COL4A2P08572 1712 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 GOLGA6L7A0A1B0GV03 622 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 KRBA1A5PL33 1030 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 OTOL1A6NHN0 477 aaPredicted RBP16.31■□□□□ 0.2
C9orf3-219ENST00000488186 EIF3CLB5ME19 914 aaKnown RBP16.31■□□□□ 0.2
C9orf3-219ENST00000488186 F5H5T6 163 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 MYO1FO00160 1098 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 CCP110O43303 1012 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 TYRP14679 529 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 CTHP32929 405 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 UBXN2BQ14CS0 331 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 IER5LQ5T953 404 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 SH3PXD2AQ5TCZ1 1133 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 RAP1GAP2Q684P5 730 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 NUDT18Q6ZVK8 323 aa16.31■□□□□ 0.2
C9orf3-219ENST00000488186 NAT16Q8N8M0 369 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms