RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 BBS12Q6ZW61 710 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 GAREM2Q75VX8 874 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 RBM23Q86U06 439 aaKnown RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 CCDC185Q8N715 623 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 C12orf50Q8NA57 414 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 RAPGEF5Q92565 580 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 TSC1Q92574 1164 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 HSPH1Q92598 858 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 ZNF707Q96C28 371 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 RNF157Q96PX1 679 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 PSMB7Q99436 277 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 KLF16Q9BXK1 252 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 ADAM33Q9BZ11 813 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 ATXN3LQ9H3M9 355 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 DHX35Q9H5Z1 703 aaKnown RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 TASP1Q9H6P5 420 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 CATSPERBQ9H7T0 1116 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 CCSER2Q9H7U1 834 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 PIDD1Q9HB75 910 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 PCDH18Q9HCL0 1135 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 CALCOCO1Q9P1Z2 691 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 STIM2Q9P246 746 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 DNMT3BQ9UBC3 853 aaKnown RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 PPARGC1AQ9UBK2 798 aaKnown RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 STOML2Q9UJZ1 356 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 COLQQ9Y215 455 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 PDE4DIPQ5VU43 2346 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 APOC4-APOC2K7ER74 178 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 KRIT1O00522 736 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ZNF185O15231 689 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 NCAM2O15394 837 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 APOC2P02655 101 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 TUBBP07437 444 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 MBL2P11226 248 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 MYL4P12829 197 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 TCF4P15884 667 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 HOXC13P31276 330 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 CHRNA3P32297 505 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 SERPINB6P35237 376 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 GJC1P36383 396 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 FNTAP49354 379 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 PGFP49763 221 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 DNA2P51530 1060 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 CLCN6P51797 869 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 TERF1P54274 439 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 HYAL1Q12794 435 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 COL19A1Q14993 1142 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 CCNG2Q16589 344 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 CYP1B1Q16678 543 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 SMTNL2Q2TAL5 461 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ATP13A4Q4VNC1 1196 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ANKRD20A8PQ5CZ79 823 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ZC3H12AQ5D1E8 599 aaKnown RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 TCEAL5Q5H9L2 206 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 KCNT1Q5JUK3 1230 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 PRSS36Q5K4E3 855 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 TTC39BQ5VTQ0 682 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 DAB2IPQ5VWQ8 1189 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 TXNRD3NBQ6F5E7 133 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ANKRD54Q6NXT1 300 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 MFSD7Q6UXD7 560 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 LRRC31Q6UY01 552 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 GPR149Q86SP6 731 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 CPNE8Q86YQ8 564 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 LRRC49Q8IUZ0 686 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 LZTR1Q8N653 840 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 SPATA4Q8NEY3 305 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 ADAM32Q8TC27 787 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 SMG7Q92540 1137 aaKnown RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 RNF25Q96BH1 459 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 GAS2L1Q99501 681 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 CALN1Q9BXU9 219 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 SLITRK6Q9H5Y7 841 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 KIF9Q9HAQ2 790 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 PLSCR2Q9NRY7 297 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 MTMR10Q9NXD2 777 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 OR12D3Q9UGF7 316 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 LSM7Q9UK45 103 aaKnown RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 ARHGAP26Q9UNA1 814 aa10.52□□□□□ -0.73
USP39-215ENST00000481409 FARP1Q9Y4F1 1045 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 ZFP37Q9Y6Q3 630 aaPredicted RBP10.52□□□□□ -0.73
USP39-215ENST00000481409 IGLV3-10A0A075B6K4 115 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 SYNJ2BP-COX16A0A087WUM0 186 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 A0A1W2PRU2 124 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 E2F8A0AVK6 867 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 C2orf78A6NCI8 922 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 WASH4PA8MWX3 477 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 EEF2KO00418 725 aaKnown RBP10.51□□□□□ -0.73
USP39-215ENST00000481409 APOL1O14791 398 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 PAGE1O75459 146 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 RFPL2O75678 378 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 STC2O76061 302 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 TBX18O95935 607 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 IL4RP24394 825 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 AVPR1AP37288 418 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 ATXN1P54253 815 aaKnown RBP10.51□□□□□ -0.73
USP39-215ENST00000481409 TPI1P60174 286 aa10.51□□□□□ -0.73
USP39-215ENST00000481409 ZNF211Q13398 564 aaPredicted RBP10.51□□□□□ -0.73
USP39-215ENST00000481409 XRCC4Q13426 336 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms