RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PPATQ06203 517 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 ANGPT1Q15389 498 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 DLGAP5Q15398 846 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 CCL14Q16627 93 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 SLC10A5Q5PT55 438 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 UTP14CQ5TAP6 766 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 N4BP2L1Q5TBK1 243 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 Q8NA96 180 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 PCSK9Q8NBP7 692 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 BRIX1Q8TDN6 353 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 KLHL32Q96NJ5 620 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 UNKLQ9H9P5 680 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 AGAP1Q9UPQ3 857 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 MTO1Q9Y2Z2 717 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 RAI2Q9Y5P3 530 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 USP16Q9Y5T5 823 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 ARAP2Q8WZ64 1704 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 SHROOM3Q8TF72 1996 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 DOPEY2Q9Y3R5 2298 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MYO10Q9HD67 2058 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF785A8K8V0 405 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 E9PLN8 166 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MYO1FO00160 1098 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 PLIN1O60240 522 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 UFL1O94874 794 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 FGBP02675 491 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 NBPF7P0C2Y1 421 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MTHFD1P11586 935 aaKnown RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 ALAS1P13196 640 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 ZKSCAN1P17029 563 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 SLC7A1P30825 629 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MPLP40238 635 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 PIK3CBP42338 1070 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MMP14P50281 582 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 VAV2P52735 878 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 CACNB3P54284 484 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 EIF4A2Q14240 407 aaKnown RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 POLD3Q15054 466 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 ABHD17BQ5VST6 288 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 SVIPQ8NHG7 77 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 SSH3Q8TE77 659 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 SMCR8Q8TEV9 937 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 NTN5Q8WTR8 489 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 NUP133Q8WUM0 1156 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 CELF1Q92879 486 aaKnown RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM125Q96AQ2 219 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 VKORC1Q9BQB6 163 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MTIF3Q9H2K0 278 aaKnown RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 RSAD1Q9HA92 442 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 SIDT1Q9NXL6 827 aaKnown RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 JKAMPQ9P055 326 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 FNIP2Q9P278 1114 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 CPNE7Q9UBL6 633 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 ZNHIT2Q9UHR6 403 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 PHTF1Q9UMS5 762 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 CORO2BQ9UQ03 480 aa4.76□□□□□ -1.65
VPS13A-210ENST00000471439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.76□□□□□ -1.65
VPS13A-210ENST00000471439 MYO3BQ8WXR4 1341 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 SPG11Q96JI7 2443 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 ANO9A1A5B4 782 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 ENO4A6NNW6 628 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 RHOBTB3O94955 611 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 ARP10275 920 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 MYF5P13349 255 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 SERPINB3P29508 390 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 AVPR1BP47901 424 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 ATP2B3Q16720 1220 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 LONRF1Q17RB8 773 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 FAM110CQ1W6H9 321 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 SPDYE7PQ495Y7 208 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 C19orf48Q6RUI8 117 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 MAML1Q92585 1016 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 PMM1Q92871 262 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 LRIG1Q96JA1 1093 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 PRMT6Q96LA8 375 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-210ENST00000471439 COQ10AQ96MF6 247 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 TBCBQ99426 244 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 MPHOSPH6Q99547 160 aaKnown RBP4.75□□□□□ -1.65
VPS13A-210ENST00000471439 TRIM54Q9BYV2 358 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 RIOX1Q9H6W3 641 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 BRD9Q9H8M2 597 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 GALNT9Q9HCQ5 603 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 SARS2Q9NP81 518 aaKnown RBP4.75□□□□□ -1.65
VPS13A-210ENST00000471439 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM74BQ9NUR3 256 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 CTTNBP2NLQ9P2B4 639 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 TBX21Q9UL17 535 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 TPCN1Q9ULQ1 816 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 PTPRFP10586 1907 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 A0A1B0GUL6 1792 aa4.75□□□□□ -1.65
VPS13A-210ENST00000471439 MAST3O60307 1309 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 PTPRQQ9UMZ3 2332 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM8BA6NDV4 472 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ZAR1LA6NP61 321 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 F8W8V4 182 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 KPNA5O15131 536 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 MBTPS2O43462 519 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 FRS3O43559 492 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 MGEA5O60502 916 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms