RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ARHGAP15Q53QZ3 475 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 PDZD4Q76G19 769 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 ADGRD2Q7Z7M1 963 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 UNC45BQ8IWX7 931 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 MMGT1Q8N4V1 131 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 CCDC26Q8TAB7 109 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 MAGOHBQ96A72 148 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 HAPLN3Q96S86 360 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 PIDD1Q9HB75 910 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 MTMR10Q9NXD2 777 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 STIM2Q9P246 746 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 V9GYY5 206 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 DENND4CQ5VZ89 1909 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 CLUHO75153 1309 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 UQCRHLA0A096LP55 91 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 EPOPA6NHQ4 379 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 RFPL2O75678 378 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 F11P03951 625 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 UQCRHP07919 91 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 MBL2P11226 248 aaPredicted RBP17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 CHRNA3P32297 505 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 COG7P83436 770 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 RING1Q06587 406 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 MMRN1Q13201 1228 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 LRIT3Q3SXY7 679 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 ANKRD20A8PQ5CZ79 823 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 BBS12Q6ZW61 710 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 HS6ST3Q8IZP7 471 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 PYROXD2Q8N2H3 581 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 NOA1Q8NC60 698 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 RNF157Q96PX1 679 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 SIK2Q9H0K1 926 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 DDX47Q9H0S4 455 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 SLITRK6Q9H5Y7 841 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 PRDM16Q9HAZ2 1276 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 TMPRSS4Q9NRS4 437 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 DZANK1Q9NVP4 752 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 MYO9BQ13459 2157 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 UNC80Q8N2C7 3258 aa17.73■□□□□ 0.43
CCDC28B-202ENST00000421922 TCRBV7S2A1N4TA0A589 114 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 COCHO43405 550 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 GOT1P17174 413 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 HARS2P49590 506 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 TERF1P54274 439 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 KLF1Q13351 362 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 TAZQ16635 292 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 ACBD5Q5T8D3 534 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF697Q5TEC3 545 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 TMC8Q8IU68 726 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CCDC105Q8IYK2 499 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 FAM71BQ8TC56 605 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 PLD4Q96BZ4 506 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 BTN2A3PQ96KV6 586 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 FCRL2Q96LA5 508 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CSPG4P5Q96PW8 444 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 FRMD8P1Q9BZ68 369 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 OSBPL2Q9H1P3 480 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 NSUN3Q9H649 340 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 IL21Q9HBE4 155 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 OR12D3Q9UGF7 316 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 TRAV19A0A0A6YYK7 116 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 A0A1W2PRU2 124 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 C2orf78A6NCI8 922 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 APOC4-APOC2K7ER74 178 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 RFXAPO00287 272 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 PAGE1O75459 146 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 OAS1P00973 400 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 APOC2P02655 101 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CKMP06732 381 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 RHOXF2BP0C7M4 288 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 TGM2P21980 687 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 HTR7P34969 479 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 FNTAP49354 379 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CYP4F8P98187 520 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 EIF4EBP2Q13542 120 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 GLE1Q53GS7 698 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 LRRC31Q6UY01 552 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 MAATS1Q7Z4T9 603 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 ANKS1BQ7Z6G8 1248 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 PRELID2Q8N945 189 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 GRK7Q8WTQ7 553 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 C1orf54Q8WWF1 131 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 HAUS1Q96CS2 278 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 SLC39A13Q96H72 371 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CCDC114Q96M63 670 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 RHOXF2Q9BQY4 288 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 HERPUD2Q9BSE4 406 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 COL25A1Q9BXS0 654 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 PRKD2Q9BZL6 878 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF576Q9H609 170 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 IGFLR1Q9H665 355 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 SFXN1Q9H9B4 322 aa17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CWC15Q9P013 229 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-202ENST00000421922 CCDC195A0A1B0GUA6 201 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 KCNU1A8MYU2 1149 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 MCF2LO15068 1137 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 POU2F2P09086 479 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 IRF1P10914 325 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 PFKLP17858 780 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms