RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RLN3Q8WXF3 142 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 FCRL2Q96LA5 508 aaPredicted RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 CPXM1Q96SM3 734 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 NAA15Q9BXJ9 866 aaKnown RBP19.14■□□□□ 0.65
CLN3-202ENST00000355477 VPS16Q9H269 839 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 CACNA2D2Q9NY47 1150 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 BCCIPQ9P287 314 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLN3-202ENST00000355477 FHOD1Q9Y613 1164 aa19.14■□□□□ 0.65
CLN3-202ENST00000355477 CKAP5Q14008 2032 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 SART1O43290 800 aaKnown RBP19.13■□□□□ 0.65
CLN3-202ENST00000355477 GABRG2P18507 467 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 SLC6A4P31645 630 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 GBP1P32455 592 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 RAPGEF1Q13905 1077 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 KRT31Q15323 416 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 FAM133BQ5BKY9 247 aaKnown RBP19.13■□□□□ 0.65
CLN3-202ENST00000355477 TMEM215Q68D42 235 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 SMYD5Q6GMV2 418 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 NADSYN1Q6IA69 706 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 RFWD3Q6PCD5 774 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 BEND5Q7L4P6 421 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 TAC4Q86UU9 113 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 UNC45BQ8IWX7 931 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 TMA16Q96EY4 203 aaKnown RBP19.13■□□□□ 0.65
CLN3-202ENST00000355477 PPP1R13BQ96KQ4 1090 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 GABRG3Q99928 467 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 LSM14BQ9BX40 385 aaKnown RBP19.13■□□□□ 0.65
CLN3-202ENST00000355477 SLC2A11Q9BYW1 496 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 LHX5Q9H2C1 402 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 PLCB1Q9NQ66 1216 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 FANCLQ9NW38 375 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 RAD54BQ9Y620 910 aa19.13■□□□□ 0.65
CLN3-202ENST00000355477 ACSL4O60488 711 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 RHOBTB1O94844 696 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 KRT9P35527 623 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 P2RY2P41231 377 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 YWHAZP63104 245 aaKnown RBP19.12■□□□□ 0.65
CLN3-202ENST00000355477 PITX1P78337 314 aaPredicted RBP19.12■□□□□ 0.65
CLN3-202ENST00000355477 LMNB2Q03252 620 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 ELF2Q15723 593 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 NUGGCQ68CJ6 796 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 SDE2Q6IQ49 451 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 SASS6Q6UVJ0 657 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 PRR23CQ6ZRP0 262 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 PGBD3Q8N328 593 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 C1orf131Q8NDD1 294 aaKnown RBP19.12■□□□□ 0.65
CLN3-202ENST00000355477 IPO4Q8TEX9 1081 aaKnown RBP19.12■□□□□ 0.65
CLN3-202ENST00000355477 AZIN2Q96A70 460 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 MYEOVQ96EZ4 313 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 SLC39A13Q96H72 371 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 POPDC2Q9HBU9 364 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 ANO10Q9NW15 660 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 DLL3Q9NYJ7 618 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 MBD1Q9UIS9 605 aaPredicted RBP19.12■□□□□ 0.65
CLN3-202ENST00000355477 TLR6Q9Y2C9 796 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 STON1Q9Y6Q2 735 aa19.12■□□□□ 0.65
CLN3-202ENST00000355477 CAPN9O14815 690 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 UCHL3P15374 230 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 SLC11A2P49281 568 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 KLK7P49862 253 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 SF3A2Q15428 464 aaKnown RBP19.11■□□□□ 0.65
CLN3-202ENST00000355477 MAP7D1Q3KQU3 841 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 PLA2G2CQ5R387 149 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 PIK3R6Q5UE93 754 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 ANKS1BQ7Z6G8 1248 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 SORCS1Q8WY21 1168 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 SERPINB11Q96P15 392 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 SMOC1Q9H4F8 434 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 ELOVL2Q9NXB9 296 aa19.11■□□□□ 0.65
CLN3-202ENST00000355477 THAP10Q9P2Z0 257 aaPredicted RBP19.11■□□□□ 0.65
CLN3-202ENST00000355477 CNOT1A5YKK6 2376 aaKnown RBP19.11■□□□□ 0.65
CLN3-202ENST00000355477 PRR5-ARHGAP8B1AHC4 643 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 GDF9O60383 454 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 IGLV3-25P01717 112 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 ERBB2P04626 1255 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 ZNF806P0C7X5 589 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 HLA-FP30511 346 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 IL12RB1P42701 662 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 ZNF445P59923 1031 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 ARHGAP8P85298 464 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 NNTQ13423 1086 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 CCDC183Q5T5S1 534 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 PMS2CLQ68D20 193 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 WFDC5Q8TCV5 224 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 SLC6A17Q9H1V8 727 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 XPO7Q9UIA9 1087 aaKnown RBP19.1■□□□□ 0.65
CLN3-202ENST00000355477 PCDHGA5Q9Y5G8 931 aa19.1■□□□□ 0.65
CLN3-202ENST00000355477 MUC22E2RYF6 1773 aaPredicted RBP19.09■□□□□ 0.65
CLN3-202ENST00000355477 TBL1XO60907 577 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 GRAP2O75791 330 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 TRUB2O95900 331 aaKnown RBP19.09■□□□□ 0.65
CLN3-202ENST00000355477 MBD3O95983 291 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 CYP11B1P15538 503 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 NDUFV2P19404 249 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 BPIFB4P59827 614 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 CREB5Q02930 508 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 EIF4EBP2Q13542 120 aaPredicted RBP19.09■□□□□ 0.65
CLN3-202ENST00000355477 ENPP2Q13822 863 aa19.09■□□□□ 0.65
CLN3-202ENST00000355477 PUM1Q14671 1186 aaKnown RBP eCLIP19.09■□□□□ 0.65
CLN3-202ENST00000355477 STX1AQ16623 288 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms