RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 SERPINB11Q96P15 392 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 FAM204AQ9H8W3 233 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 KIF9Q9HAQ2 790 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 MRPL47Q9HD33 250 aaKnown RBP11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 PIGVQ9NUD9 493 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 DDIT4Q9NX09 232 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 RRN3Q9NYV6 651 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 CTTNBP2NLQ9P2B4 639 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 STAP1Q9ULZ2 295 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 TLR6Q9Y2C9 796 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 HBS1LQ9Y450 684 aaKnown RBP11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 ADGRG1Q9Y653 693 aa11.15□□□□□ -0.62
SMARCA4-213ENST00000587988 ENDOD1O94919 500 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 PSMC3P17980 439 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 CORO1AP31146 461 aaKnown RBP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 GBP1P32455 592 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 VAV2P52735 878 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 ZNF143P52747 638 aaPredicted RBP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 DEUP1Q05D60 604 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 NNTQ13423 1086 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 DAB2IPQ5VWQ8 1189 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 TRIM68Q6AZZ1 485 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 Q6ZNB5 142 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 HTR3DQ70Z44 454 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 DDX42Q86XP3 938 aaKnown RBP eCLIP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 DENND1CQ8IV53 801 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 BBS7Q8IWZ6 715 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 ARFGAP1Q8N6T3 406 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 FAM172AQ8WUF8 416 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 E2F7Q96AV8 911 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 PLD4Q96BZ4 506 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 PGAP3Q96FM1 320 aaPredicted RBP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 LACRTQ9GZZ8 138 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 LINC00597Q9H2U6 94 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 ANLNQ9NQW6 1124 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 TMPRSS4Q9NRS4 437 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 IGSF9Q9P2J2 1179 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 XPO7Q9UIA9 1087 aaKnown RBP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 SALL4Q9UJQ4 1053 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 ANAPC7Q9UJX3 599 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 SH3BP1Q9Y3L3 701 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 WNT6Q9Y6F9 365 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 DUSP10Q9Y6W6 482 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 KIF26AQ9ULI4 1882 aaPredicted RBP11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 UNC80Q8N2C7 3258 aa11.14□□□□□ -0.63
SMARCA4-213ENST00000587988 E2F8A0AVK6 867 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 KCNU1A8MYU2 1149 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 I6L893 689 aaPredicted RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 PJA2O43164 708 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 NARSO43776 548 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 IPO7O95373 1038 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 PSMA2P25787 234 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 GDI1P31150 447 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 RDXP35241 583 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 CXCR3P49682 368 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 KPNA1P52294 538 aaPredicted RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 HDAC4P56524 1084 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 KRT83P78385 493 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 RING1Q06587 406 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 FCHO2Q0JRZ9 810 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 STRADAQ7RTN6 431 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 FAM131BQ86XD5 332 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 CPNE8Q86YQ8 564 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 RNF135Q8IUD6 432 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 FNIP1Q8TF40 1166 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 DEPDC1BQ8WUY9 529 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 RFFLQ8WZ73 363 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 NXPE3Q969Y0 559 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 CNPY3Q9BT09 278 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 TRMT61BQ9BVS5 477 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 UVRAGQ9P2Y5 699 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 TRIM10Q9UDY6 481 aa11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 AGO1Q9UL18 857 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-213ENST00000587988 GOLGA6L7A0A1B0GV03 622 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 OTOL1A6NHN0 477 aaPredicted RBP11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 MYO1FO00160 1098 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 MTA2O94776 668 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 MOCS2O96007 188 aaPredicted RBP11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 F9P00740 461 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 ARSAP15289 507 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 CCR1P32246 355 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 HARS2P49590 506 aaKnown RBP11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 TNK2Q07912 1038 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 TCEAL1Q15170 157 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 EML3Q32P44 896 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 NUGGCQ68CJ6 796 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 NADSYN1Q6IA69 706 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 CC2D1AQ6P1N0 951 aaPredicted RBP11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 KIAA1328Q86T90 577 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 UNC45BQ8IWX7 931 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 RHOT2Q8IXI1 618 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 YAF2Q8IY57 180 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 ADGRG2Q8IZP9 1017 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 GJD3Q8N144 294 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 CCDC185Q8N715 623 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 OSCP1Q8WVF1 389 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 RNF34Q969K3 372 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 P2RY11Q96G91 374 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 FAM83CQ9BQN1 747 aa11.12□□□□□ -0.63
SMARCA4-213ENST00000587988 MAGEB5Q9BZ81 275 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms