RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 BBS7Q8IWZ6 715 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 CPXM2Q8N436 756 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 C1orf131Q8NDD1 294 aaKnown RBP9.04□□□□□ -0.96
USP3-208ENST00000558285 TSTD1Q8NFU3 115 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 RUBCNQ92622 972 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 SPACA7Q96KW9 195 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 KREMEN1Q96MU8 473 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 LSM14BQ9BX40 385 aaKnown RBP9.04□□□□□ -0.96
USP3-208ENST00000558285 LINC00597Q9H2U6 94 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 POPDC2Q9HBU9 364 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 DNAJC17Q9NVM6 304 aaKnown RBP9.04□□□□□ -0.96
USP3-208ENST00000558285 ASNSD1Q9NWL6 643 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 STAP1Q9ULZ2 295 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 TICRRQ7Z2Z1 1910 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 ANKRD62A6NC57 917 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 GOLGA6L19H0YKK7 550 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 CACNG3O60359 315 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 HSF2BPO75031 334 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 STC2O76061 302 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 EGFP01133 1207 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 UCHL3P15374 230 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 STAT1P42224 750 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 DGKGP49619 791 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 RGS7P49802 495 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 OXCT1P55809 520 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 YWHAZP63104 245 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 UBXN1Q04323 297 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 STARD3Q14849 445 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 EIF4HQ15056 248 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 TRIP4Q15650 581 aaPredicted RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 ELF2Q15723 593 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 PKDCCQ504Y2 493 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 USP39Q53GS9 565 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 KLHDC7AQ5VTJ3 777 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 CDKAL1Q5VV42 579 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 MSANTD2Q6P1R3 559 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 RHBDF2Q6PJF5 856 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 TXNDC11Q6PKC3 985 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 C11orf57Q6ZUT1 292 aaPredicted RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 SCD5Q86SK9 330 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 ALYREFQ86V81 257 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 IRF2BP1Q8IU81 584 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 ZNF687Q8N1G0 1237 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 ZBTB44Q8NCP5 570 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 RPLP0P6Q8NHW5 317 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 DDI1Q8WTU0 396 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 TFAP2BQ92481 460 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 AZIN2Q96A70 460 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 IQCDQ96DY2 449 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 POM121Q96HA1 1249 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 PPP1R13BQ96KQ4 1090 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 ZFRQ96KR1 1074 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 VPS16Q9H269 839 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 NMUR1Q9HB89 426 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 SAMSN1Q9NSI8 373 aaKnown RBP9.03□□□□□ -0.96
USP3-208ENST00000558285 FAM86C1Q9NVL1 165 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 FAM53CQ9NYF3 392 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 TAB2Q9NYJ8 693 aa9.03□□□□□ -0.96
USP3-208ENST00000558285 A0A0A0MRY4 1105 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 LGALS16A8MUM7 142 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 MOCS3O95396 460 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TBX18O95935 607 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 F9P00740 461 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 HMBSP08397 361 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TYRP14679 529 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 ABCB4P21439 1286 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 GPD2P43304 727 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TBX4P57082 545 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 SFSWAPQ12872 951 aaKnown RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 PDCLQ13371 301 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 SIM2Q14190 667 aaPredicted RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 DMC1Q14565 340 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 DRAP1Q14919 205 aaPredicted RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 KRT31Q15323 416 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 HSP90AA4PQ58FG1 418 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 C10orf76Q5T2E6 689 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 ADGRF1Q5T601 910 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 LAIR1Q6GTX8 287 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 PMF1Q6P1K2 205 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TPGS1Q6ZTW0 290 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 TMEM110Q86TL2 294 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 WDR5BQ86VZ2 330 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 DENND1CQ8IV53 801 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 FAM71AQ8IYT1 594 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 ATP6V0D2Q8N8Y2 350 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TERB1Q8NA31 727 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 WFIKKN2Q8TEU8 576 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 KAT5Q92993 513 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 RNF34Q969K3 372 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 SLC4A5Q9BY07 1137 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 FAM204AQ9H8W3 233 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 RBM12Q9NTZ6 932 aaKnown RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 FANCLQ9NW38 375 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 TJP2Q9UDY2 1190 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 LIMA1Q9UHB6 759 aaKnown RBP9.02□□□□□ -0.96
USP3-208ENST00000558285 TLR6Q9Y2C9 796 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 MYH10P35580 1976 aa9.02□□□□□ -0.96
USP3-208ENST00000558285 F5P12259 2224 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 DENND4CQ5VZ89 1909 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms