RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GNA15P30679 374 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 MFAP3P55082 362 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 SIM2Q14190 667 aaPredicted RBP11.13□□□□□ -0.63
CD44-227ENST00000528086 KRT31Q15323 416 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 MEA1Q16626 185 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 OTUD1Q5VV17 481 aaPredicted RBP11.13□□□□□ -0.63
CD44-227ENST00000528086 BTBD8Q5XKL5 378 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 KIAA1211LQ6NV74 962 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 SIX6OS1Q8N1H7 587 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 CPXM2Q8N436 756 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 CAMKK1Q8N5S9 505 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 OLIG1Q8TAK6 271 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 DQX1Q8TE96 717 aaKnown RBP11.13□□□□□ -0.63
CD44-227ENST00000528086 STK32AQ8WU08 396 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 RMDN1Q96DB5 314 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 DUSP15Q9H1R2 295 aaPredicted RBP11.13□□□□□ -0.63
CD44-227ENST00000528086 PLCB1Q9NQ66 1216 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 ABCC13Q9NSE7 274 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 FANCLQ9NW38 375 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 CALCOCO1Q9P1Z2 691 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 DEC1Q9P2X7 70 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 PCDHGC3Q9UN70 934 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 SLC8A2Q9UPR5 921 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 SIK3Q9Y2K2 1263 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 HBS1LQ9Y450 684 aaKnown RBP11.13□□□□□ -0.63
CD44-227ENST00000528086 PI4KAP42356 2102 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 NUMA1Q14980 2115 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 TBC1D3BA6NDS4 549 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 AXIN1O15169 862 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 THAP12O43422 761 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 APBB3O95704 486 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 ERBB2P04626 1255 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 WASP42768 502 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 SLC8A3P57103 927 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PDCLQ13371 301 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 ENPP2Q13822 863 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 DRAP1Q14919 205 aaPredicted RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 PLK5Q496M5 336 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PTPN20Q4JDL3 420 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 CT47A1Q5JQC4 288 aaPredicted RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 C10orf76Q5T2E6 689 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 GRAMD4Q6IC98 578 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 RFWD3Q6PCD5 774 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PRR23BQ6ZRT6 265 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 RSRC2Q7L4I2 434 aaKnown RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 TAC4Q86UU9 113 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PASD1Q8IV76 773 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 ADAM32Q8TC27 787 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 PLD4Q96BZ4 506 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 ERLEC1Q96DZ1 483 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 ZC3H10Q96K80 434 aaKnown RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 PRICKLE1Q96MT3 831 aaPredicted RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 GBP4Q96PP9 640 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 CDK5RAP1Q96SZ6 601 aaKnown RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 TPSD1Q9BZJ3 242 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 DNAI2Q9GZS0 605 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 CD93Q9NPY3 652 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 RXFP3Q9NSD7 469 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 WDR35Q9P2L0 1181 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 MBD1Q9UIS9 605 aaPredicted RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 LSM7Q9UK45 103 aaKnown RBP11.12□□□□□ -0.63
CD44-227ENST00000528086 SLC27A6Q9Y2P4 619 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 SPTBN2O15020 2390 aa11.12□□□□□ -0.63
CD44-227ENST00000528086 FAM170AA1A519 330 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 I6L893 689 aaPredicted RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 TSPAN3O60637 253 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 RPP40O75818 363 aaKnown RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 FBXO21O94952 628 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 UCHL3P15374 230 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 CHRNB2P17787 502 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 TFE3P19532 575 aaPredicted RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 HLA-FP30511 346 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 CNR2P34972 360 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 USP8P40818 1118 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 JAM2P57087 298 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 SPEM2Q0P670 501 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 PPP2R5DQ14738 602 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 CCDC6Q16204 474 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 MAP7D1Q3KQU3 841 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 LAIR1Q6GTX8 287 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 ANO7Q6IWH7 933 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 TRNP1Q6NT89 227 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 KIAA0907Q7Z7F0 614 aaPredicted RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 NOP9Q86U38 636 aaKnown RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 ZNF513Q8N8E2 541 aaPredicted RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 C1orf131Q8NDD1 294 aaKnown RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 RLN3Q8WXF3 142 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 SORCS1Q8WY21 1168 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 ACDQ96AP0 544 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 FUCA2Q9BTY2 467 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 LSM14BQ9BX40 385 aaKnown RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 DCLK3Q9C098 648 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 SLC6A17Q9H1V8 727 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 VPS16Q9H269 839 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 LHX5Q9H2C1 402 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 ST7Q9NRC1 585 aa11.11□□□□□ -0.63
CD44-227ENST00000528086 OLA1Q9NTK5 396 aaKnown RBP11.11□□□□□ -0.63
CD44-227ENST00000528086 RAD54BQ9Y620 910 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms