RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PPIDQ08752 370 aaKnown RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 NAB1Q13506 487 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 LPIN1Q14693 890 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 KCNT1Q5JUK3 1230 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 TCHHL1Q5QJ38 904 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 C16orf89Q6UX73 402 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ILDR2Q71H61 639 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 RNF168Q8IYW5 571 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 BBS5Q8N3I7 341 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 TAB3Q8N5C8 712 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ZBTB8BQ8NAP8 495 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ACER1Q8TDN7 264 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 CLEC4DQ8WXI8 215 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ATP6V0A1Q93050 837 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ATP2A3Q93084 1043 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 SORT1Q99523 831 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 EBNA1BP2Q99848 306 aaKnown RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 GCOM2Q9BZD3 368 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 CYP4F11Q9HBI6 524 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 HOMER2Q9NSB8 354 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 DDX18Q9NVP1 670 aaKnown RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 FAIMQ9NVQ4 179 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 RSL24D1Q9UHA3 163 aaKnown RBP9.99□□□□□ -0.81
SYNE1-230ENST00000495090 DCDC2Q9UHG0 476 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 EMCNQ9ULC0 261 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 PCDHA11Q9Y5I1 949 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF541Q9H0D2 1346 aa9.99□□□□□ -0.81
SYNE1-230ENST00000495090 BCLAF3A2AJT9 711 aaKnown RBP9.98□□□□□ -0.81
SYNE1-230ENST00000495090 STBD1O95210 358 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 TRUB2O95900 331 aaKnown RBP9.98□□□□□ -0.81
SYNE1-230ENST00000495090 TPSB2P20231 275 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PROZP22891 400 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PTGER2P43116 358 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PCLAFQ15004 111 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 TPSAB1Q15661 275 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 DOK7Q18PE1 504 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PTPN20Q4JDL3 420 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 CYP4A22Q5TCH4 519 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 MROH9Q5TGP6 573 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 STRIP1Q5VSL9 837 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 DUS1LQ6P1R4 473 aaKnown RBP9.98□□□□□ -0.81
SYNE1-230ENST00000495090 TSHZ1Q6ZSZ6 1077 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 SEPT12Q8IYM1 358 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 KIAA0319LQ8IZA0 1049 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 JOSD2Q8TAC2 188 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 SLC7A3Q8WY07 619 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 CNDP1Q96KN2 507 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 NIF3L1Q9GZT8 377 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PDZD7Q9H5P4 517 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 XPNPEP1Q9NQW7 623 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 MOCS1Q9NZB8 636 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 CCPG1Q9ULG6 757 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 PCDHA10Q9Y5I2 948 aa9.98□□□□□ -0.81
SYNE1-230ENST00000495090 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PRSS51A0A1B0GVH4 220 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TMEM221A6NGB7 291 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 UGT1A9O60656 530 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 LYPLA1O75608 230 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ALDH1A2O94788 518 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 STK10O94804 968 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 HNRNPCP07910 306 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 THRAP10827 490 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TGM2P21980 687 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PCSK6P29122 969 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 MIPP30301 263 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ADSLP30566 484 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ALDH3B2P48448 385 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ACOT2P49753 483 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ABCE1P61221 599 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 KLF10Q13118 480 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SPIDRQ14159 915 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 STEAP4Q687X5 459 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PTF1AQ7RTS3 328 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SETD3Q86TU7 594 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 WDR49Q8IV35 697 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 USP6NLQ92738 828 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SIGLEC10Q96LC7 697 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CNBD2Q96M20 576 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PRPF18Q99633 342 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 UGT1A7Q9HAW7 530 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 UGT1A10Q9HAW8 530 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 UGT1A8Q9HAW9 530 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 IFT122Q9HBG6 1241 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PCDH18Q9HCL0 1135 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CISHQ9NSE2 258 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 USP18Q9UMW8 372 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 GNEQ9Y223 722 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 WDR37Q9Y2I8 494 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CDY2AQ9Y6F7 541 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CDY1Q9Y6F8 540 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ADGRA2Q96PE1 1338 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SH3PXD2BA1X283 911 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 G3V3G9 751 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 H7C0C1 242 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 MED7O43513 233 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TOMM70O94826 608 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ATP6V1B1P15313 513 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ATP5OP48047 213 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 GALK1P51570 392 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 HK2P52789 917 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms