RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ADAM23O75077 832 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 KLF8O95600 359 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-214ENST00000490398 IGLV3-27P01718 113 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 ERBB2P04626 1255 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 NCAM1P13591 858 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 HOXA6P31267 233 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 TNFRSF4P43489 277 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 ACADSBP45954 432 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 SGSHP51688 502 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 PTPN20Q4JDL3 420 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 C10orf76Q5T2E6 689 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 TAF3Q5VWG9 929 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 WDR5BQ86VZ2 330 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 DDX1Q92499 740 aaKnown RBP18.91■□□□□ 0.62
COL9A3-214ENST00000490398 FAM149B1Q96BN6 582 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 MYEOVQ96EZ4 313 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 ACOX2Q99424 681 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 STK33Q9BYT3 514 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 FAM207AQ9NSI2 230 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-214ENST00000490398 FBXO10Q9UK96 956 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 MMP17Q9ULZ9 603 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 ZNF510Q9Y2H8 683 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 OTOGLQ3ZCN5 2332 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 DNAH14Q0VDD8 3507 aa18.91■□□□□ 0.62
COL9A3-214ENST00000490398 F8VZ95 297 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 CYP11B1P15538 503 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 WASP42768 502 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 MRPS21P82921 87 aaKnown RBP18.9■□□□□ 0.62
COL9A3-214ENST00000490398 SYCP1Q15431 976 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 EGFLAMQ63HQ2 1017 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 FAM183BPQ6ZVS7 135 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 NOP9Q86U38 636 aaKnown RBP18.9■□□□□ 0.62
COL9A3-214ENST00000490398 TAC4Q86UU9 113 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 DHX40Q8IX18 779 aaKnown RBP18.9■□□□□ 0.62
COL9A3-214ENST00000490398 ACDQ96AP0 544 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 PPP1R13BQ96KQ4 1090 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 FCRL2Q96LA5 508 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-214ENST00000490398 XPO6Q96QU8 1125 aaKnown RBP18.9■□□□□ 0.62
COL9A3-214ENST00000490398 FUCA2Q9BTY2 467 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 LHX5Q9H2C1 402 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 NLRC4Q9NPP4 1024 aa18.9■□□□□ 0.62
COL9A3-214ENST00000490398 FAM186AA6NE01 2351 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 CHKAP35790 457 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 DGKGP49619 791 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 TBX4P57082 545 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 POLR2FP61218 127 aaKnown RBP18.89■□□□□ 0.61
COL9A3-214ENST00000490398 GEN1Q17RS7 908 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 CPXM2Q8N436 756 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 ERLEC1Q96DZ1 483 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 STOML2Q9UJZ1 356 aa18.89■□□□□ 0.61
COL9A3-214ENST00000490398 PTPRZ1P23471 2315 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-214ENST00000490398 LRRC10BA6NIK2 292 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 LGALS16A8MUM7 142 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 GRAP2O75791 330 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 SLC6A4P31645 630 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 KRT9P35527 623 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 HARS2P49590 506 aaKnown RBP18.88■□□□□ 0.61
COL9A3-214ENST00000490398 JAM2P57087 298 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 YWHAZP63104 245 aaKnown RBP18.88■□□□□ 0.61
COL9A3-214ENST00000490398 SIM2Q14190 667 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-214ENST00000490398 CRY1Q16526 586 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 C2CD6Q53TS8 623 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 FAM133BQ5BKY9 247 aaKnown RBP18.88■□□□□ 0.61
COL9A3-214ENST00000490398 NADSYN1Q6IA69 706 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 RFWD3Q6PCD5 774 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 PRR23BQ6ZRT6 265 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 CAMKK1Q8N5S9 505 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 SLC20A1Q8WUM9 679 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 GOLGA1Q92805 767 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 SLC39A13Q96H72 371 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 TPSD1Q9BZJ3 242 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 XPO7Q9UIA9 1087 aaKnown RBP18.88■□□□□ 0.61
COL9A3-214ENST00000490398 INVSQ9Y283 1065 aa18.88■□□□□ 0.61
COL9A3-214ENST00000490398 DCLK1O15075 740 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 AXIN1O15169 862 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 TEX33O43247 280 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 GFPT2O94808 682 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 APBB3O95704 486 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 IGLV3-25P01717 112 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 MMEP08473 750 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 CHRNB2P17787 502 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 CDK11BP21127 795 aaKnown RBP18.87■□□□□ 0.61
COL9A3-214ENST00000490398 HOXD9P28356 352 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-214ENST00000490398 FKBP15Q5T1M5 1219 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 OR6B2Q6IFH4 312 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 ANO7Q6IWH7 933 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 OLFML1Q6UWY5 402 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 BEND5Q7L4P6 421 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 DEFB106AQ8N104 65 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 ZNF513Q8N8E2 541 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-214ENST00000490398 TSTD1Q8NFU3 115 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 EPS8L1Q8TE68 723 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 DDI1Q8WTU0 396 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 ADAM33Q9BZ11 813 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 POPDC2Q9HBU9 364 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 STARD13Q9Y3M8 1113 aa18.87■□□□□ 0.61
COL9A3-214ENST00000490398 DCHS1Q96JQ0 3298 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 SYCE3A1L190 88 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 WASH3PC4AMC7 463 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CAPN9O14815 690 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms