RNA–Protein interactions for RNA: ENST00000483495.5

CPNE1-225, Transcript of copine 1, human

TSL 5

Gene CPNE1, Length 1,853 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-225	ENST00000483495	EXOC3L1	Q86VI1	746 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	TRIM62	Q9BVG3	475 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	ZCWPW1	Q9H0M4	648 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	EPN3	Q9H201	632 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	PPCS	Q9HAB8	311 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	PAK6	Q9NQU5	681 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	ETNK2	Q9NVF9	386 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	XPO7	Q9UIA9	1087 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	TRIM17	Q9Y577	477 aa		13.72	□□□□□ -0.21
CPNE1-225	ENST00000483495	C5orf60	A6NFR6	353 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	GOLGA8M	H3BSY2	632 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	TRAPPC3	O43617	180 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	HCAR3	P49019	387 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	CXCR3	P49682	368 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	PAFAH1B3	Q15102	231 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	RASA2	Q15283	850 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	BSPRY	Q5W0U4	402 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	KCNT2	Q6UVM3	1135 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	PPP1R21	Q6ZMI0	780 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	CTU1	Q7Z7A3	348 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	CCDC13	Q8IYE1	715 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	PDIK1L	Q8N165	341 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	SH3TC2	Q8TF17	1288 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	WDR83	Q9BRX9	315 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	UNC93B1	Q9H1C4	597 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	TMPRSS4	Q9NRS4	437 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	FETUB	Q9UGM5	382 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	CLUH	O75153	1309 aa		13.71	□□□□□ -0.21
CPNE1-225	ENST00000483495	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495		I6L893	689 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	TNFRSF10B	O14763	440 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	SYN3	O14994	580 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	DCLK1	O15075	740 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	MAP3K6	O95382	1288 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	IGLV3-25	P01717	112 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	OR1G1	P47890	313 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ZNF135	P52742	658 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	GPX6	P59796	221 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	EIF4EBP2	Q13542	120 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	RFX8	Q6ZV50	586 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	DBF4B	Q8NFT6	615 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	PYROXD1	Q8WU10	500 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	APBB2	Q92870	758 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ARHGEF2	Q92974	986 aa	Known RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	FAM193B	Q96PV7	902 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	COLEC11	Q9BWP8	271 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	KLC2	Q9H0B6	622 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ANLN	Q9NQW6	1124 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	RAB6B	Q9NRW1	208 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	DDIT4	Q9NX09	232 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	COX16	Q9P0S2	106 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	DNAJB4	Q9UDY4	337 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	MFHAS1	Q9Y4C4	1052 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	PTPRD	P23468	1912 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	NLRC5	Q86WI3	1866 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	MFSD11	O43934	449 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	GCA	P28676	217 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ARL13B	Q3SXY8	428 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	DCP1B	Q8IZD4	617 aa	Known RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	CRIPAK	Q8N1N5	446 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ATP11C	Q8NB49	1132 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ADAM32	Q8TC27	787 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	BCAS4	Q8TDM0	211 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	TFB1M	Q8WVM0	346 aa	Known RBP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	SEPT8	Q92599	483 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	CASD1	Q96PB1	797 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	CTNNAL1	Q9UBT7	734 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	OGDHL	Q9ULD0	1010 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	PCDHB7	Q9Y5E2	793 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	ACTL7B	Q9Y614	415 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	RAD54B	Q9Y620	910 aa		13.7	□□□□□ -0.22
CPNE1-225	ENST00000483495	PATJ	Q8NI35	1801 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	EXOC1L	A0A1B0GW35	172 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	EEF2K	O00418	725 aa	Known RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	BANF1	O75531	89 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	ZNF189	O75820	626 aa	Predicted RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	PHB	P35232	272 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	SLC5A3	P53794	718 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	MRPL58	Q14197	206 aa	Known RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	PRKD1	Q15139	912 aa	Predicted RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	CCDC38	Q502W7	563 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	TAC4	Q86UU9	113 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	CYP4X1	Q8N118	509 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	TAB3	Q8N5C8	712 aa	Predicted RBP	13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	MCU	Q8NE86	351 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	FBXO36	Q8NEA4	188 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	SCAMP5	Q8TAC9	235 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	CCDC110	Q8TBZ0	833 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	MAML1	Q92585	1016 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	EDEM1	Q92611	657 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	VPS37B	Q9H9H4	285 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	ETNK1	Q9HBU6	452 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	SLC24A2	Q9UI40	661 aa		13.69	□□□□□ -0.22
CPNE1-225	ENST00000483495	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms