RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 TRIM6Q9C030 488 aaPredicted RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MTO1Q9Y2Z2 717 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 PCDHA11Q9Y5I1 949 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MAD1L1Q9Y6D9 718 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 NRCAMQ92823 1304 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 HNRNPCL1O60812 293 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 CD4P01730 458 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 CDK16Q00536 496 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 HIC1Q14526 733 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 XKR4Q5GH76 650 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 HEATR6Q6AI08 1181 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 TMEM40Q8WWA1 233 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 IQCGQ9H095 443 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 XAB2Q9HCS7 855 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 SLC5A4Q9NY91 659 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MOCS1Q9NZB8 636 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 KLK14Q9P0G3 267 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 KRT38O76015 456 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 GM2AP17900 193 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 TKTP29401 623 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MATKP42679 507 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 SOX4Q06945 474 aaPredicted RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 HTR3CQ8WXA8 447 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MTBPQ96DY7 904 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 PTCD3Q96EY7 689 aaKnown RBP16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MIPEPQ99797 713 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 MECRQ9BV79 373 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 RNF39Q9H2S5 420 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 FZD10Q9ULW2 581 aa16.55■□□□□ 0.24
SHQ1-202ENST00000444040 F2P00734 622 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 CYP2C9P11712 490 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 NEFHP12036 1026 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 SERPINB3P29508 390 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ANKRD20A2Q5SQ80 823 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ANKRD20A1Q5TYW2 823 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ANKRD20A3Q5VUR7 823 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 CES4AQ5XG92 561 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 CYS1Q717R9 158 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 FAM131BQ86XD5 332 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 GIMAP7Q8NHV1 300 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 NPLOC4Q8TAT6 608 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 BRI3BPQ8WY22 251 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 PRR11Q96HE9 360 aaPredicted RBP16.54■□□□□ 0.24
SHQ1-202ENST00000444040 SNX25Q9H3E2 840 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 GOLGA2P5Q9HBQ8 144 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 FBXO6Q9NRD1 293 aaPredicted RBP16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ARL8BQ9NVJ2 186 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 KAT6AQ92794 2004 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 CCL15-CCL14A0A0B4J2E2 113 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 PEX11AO75192 247 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 HAUS5O94927 633 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 KCNE1P15382 129 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 AXLP30530 894 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 CCL15Q16663 113 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 NBPF20Q3BBV1 942 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 EFHC1Q5JVL4 640 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 OTUD1Q5VV17 481 aaPredicted RBP16.54■□□□□ 0.24
SHQ1-202ENST00000444040 DPY19L2Q6NUT2 758 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 DEFB106AQ8N104 65 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ARMC2Q8NEN0 867 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 APPL2Q8NEU8 664 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 TFB1MQ8WVM0 346 aaKnown RBP16.54■□□□□ 0.24
SHQ1-202ENST00000444040 ZNF560Q96MR9 790 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 SIRPGQ9P1W8 387 aa16.54■□□□□ 0.24
SHQ1-202ENST00000444040 NKX1-2Q9UD57 310 aaPredicted RBP16.54■□□□□ 0.24
SHQ1-202ENST00000444040 A0A0A0MRY4 1105 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 HACD1B0YJ81 288 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 XPO1O14980 1071 aaKnown RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 DIAPH2O60879 1101 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 ELF1P32519 619 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 CCNG1P51959 295 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 SLC25A52Q3SY17 297 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 UBXN11Q5T124 520 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 PIGZQ86VD9 579 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 NDRG1Q92597 394 aaKnown RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 SPATA13Q96N96 652 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 LGMNQ99538 433 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 SLC13A1Q9BZW2 595 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 ARHGEF4Q9NR80 690 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 RCOR3Q9P2K3 495 aaPredicted RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 DYNC1LI2O43237 492 aaPredicted RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 RPSAP08865 295 aaKnown RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 MYL2P10916 166 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 PNPLA4P41247 253 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 TAF6P49848 677 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 ADAM17P78536 824 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 STEAP4Q687X5 459 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 DENND5BQ6ZUT9 1274 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 BNIPLQ7Z465 357 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 C7orf26Q96N11 449 aa16.53■□□□□ 0.24
SHQ1-202ENST00000444040 PIN4Q9Y237 131 aaKnown RBP16.53■□□□□ 0.24
SHQ1-202ENST00000444040 FAM237BA0A1B0GVD1 139 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 C2orf71A6NGG8 1288 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 CYB561D2O14569 222 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 ALDH1A2O94788 518 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 ARL4AP40617 200 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 PITX1P78337 314 aaPredicted RBP16.52■□□□□ 0.24
SHQ1-202ENST00000444040 BST1Q10588 318 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 SNX17Q15036 470 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms