RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NAMPTP43490 491 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 PAPOLAP51003 745 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 IRX1P78414 480 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 CYTH1Q15438 398 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ZRSR2Q15696 482 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 PDCD2Q16342 344 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 C6orf163Q5TEZ5 329 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 TMPRSS6Q8IU80 811 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 PHACTR1Q9C0D0 580 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 RMI1Q9H9A7 625 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ZNF711Q9Y462 761 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 CDH23Q9H251 3354 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 APOL1O14791 398 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 RNASEH1O60930 286 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 CSPG5O95196 566 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 ANPEPP15144 967 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CYP2F1P24903 491 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 EPHA3P29320 983 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SDC4P31431 198 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 NDUFV1P49821 464 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 MAPK10P53779 464 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 AQP4P55087 323 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CACNB2Q08289 660 aaPredicted RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 DCAF6Q58WW2 860 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TRIM72Q6ZMU5 477 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 BBS12Q6ZW61 710 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 PID1Q7Z2X4 250 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CAND1Q86VP6 1230 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 SLC26A11Q86WA9 606 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 ZNF677Q86XU0 584 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 PLD6Q8N2A8 252 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 ZNF276Q8N554 614 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 VTI1AQ96AJ9 217 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 GPRASP2Q96D09 838 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TMA16Q96EY4 203 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 CNBD2Q96M20 576 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 GMLQ99445 158 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TRIM8Q9BZR9 551 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 XYLT2Q9H1B5 865 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 IL1RL2Q9HB29 575 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CYP4F12Q9HCS2 524 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 XAB2Q9HCS7 855 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 SLC24A2Q9UI40 661 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 LNPEPQ9UIQ6 1025 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 A0A1B0GTW7 788 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 ADM5C9JUS6 153 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CCL22O00626 93 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 LUC7L3O95232 432 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 SLC4A1P02730 911 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TXNP10599 105 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 LMO2P25791 158 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 ETFBP38117 255 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 MRPS22P82650 360 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 DLG1Q12959 904 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 PRKD1Q15139 912 aaPredicted RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 SFT2D3Q587I9 215 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 PTCD3Q96EY7 689 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 TMEM176AQ96HP8 235 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SIK2Q9H0K1 926 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 DHX33Q9H6R0 707 aaKnown RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 ANLNQ9NQW6 1124 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TMEM216Q9P0N5 145 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CORO1CQ9ULV4 474 aaPredicted RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 V9GYQ6 96 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SIGLEC16A6NMB1 481 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 A8MXQ7 604 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 TMEM233B4DJY2 109 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 IRF6O14896 467 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 FARP2O94887 1054 aaPredicted RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 LYPLA2O95372 231 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 CHRNGP07510 517 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 PSMB4P28070 264 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 RTP1P59025 263 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 DEUP1Q05D60 604 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.93□□□□□ -0.98
USP40-203ENST00000427112 HSP90AA5PQ58FG0 334 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.93□□□□□ -0.98
USP40-203ENST00000427112 MCUQ8NE86 351 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SLC44A1Q8WWI5 657 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 LPAR1Q92633 364 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 NKD2Q969F2 451 aaPredicted RBP8.93□□□□□ -0.98
USP40-203ENST00000427112 ARHGEF4Q9NR80 690 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 ASNSD1Q9NWL6 643 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SNTG2Q9NY99 539 aa8.93□□□□□ -0.98
USP40-203ENST00000427112 SOWAHBA6NEL2 793 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 GOLGA8CPA6NN73 597 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 APOC4-APOC2K7ER74 178 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 TPST1O60507 370 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 LDHAP00338 332 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 APOC2P02655 101 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ARRB2P32121 409 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 CCDC14Q49A88 953 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 TTC39BQ5VTQ0 682 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 OLFML2BQ68BL8 750 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 CDCA2Q69YH5 1023 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 ADGRF2Q8IZF7 708 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 OR52K1Q8NGK4 314 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 EDEM1Q92611 657 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ZNF669Q96BR6 464 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 RPL10LQ96L21 214 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms