RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FAM92AA1XBS5 289 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MDM4O15151 490 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TBX18O95935 607 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 KRT10P13645 584 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 GTF2A1P52655 376 aaPredicted RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MRPS25P82663 173 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 CLUL1Q15846 466 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 ARL13BQ3SXY8 428 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 PDE12Q6L8Q7 609 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 LILRA6Q6PI73 481 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 SPOCD1Q6ZMY3 1216 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 SLC13A5Q86YT5 568 aaPredicted RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TIFAQ96CG3 184 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 LRRC1Q9BTT6 524 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MAK16Q9BXY0 300 aaKnown RBP10.42□□□□□ -0.74
HMGB3-201ENST00000325307 MAN1C1Q9NR34 630 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 RASAL2Q9UJF2 1139 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 LAMA3Q16787 3333 aa10.42□□□□□ -0.74
HMGB3-201ENST00000325307 TARSL2A2RTX5 802 aaKnown RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 FSCN2O14926 492 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CCL16O15467 120 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TLR5O60602 858 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CD48P09326 243 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 HMGA1P17096 107 aaKnown RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 KDELR1P24390 212 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CLCN4P51793 760 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 EFHC2Q5JST6 749 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 BEND5Q7L4P6 421 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 SMOC2Q9H3U7 446 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CCSER2Q9H7U1 834 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TLE6Q9H808 572 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CLIC5Q9NZA1 410 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 UXTQ9UBK9 157 aaPredicted RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 GBF1Q92538 1859 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 HMBSP08397 361 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 EPCAMP16422 314 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 BMP8BP34820 402 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 DYNLT1P63172 113 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TFDP3Q5H9I0 405 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 RFX6Q8HWS3 928 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 KLHL7Q8IXQ5 586 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 SLC22A17Q8WUG5 538 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 PSMG2Q969U7 264 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 SERPINB11Q96P15 392 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 HINFPQ9BQA5 517 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TMPRSS4Q9NRS4 437 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 OLA1Q9NTK5 396 aaKnown RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 MARCH2Q9P0N8 246 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 DMGDHQ9UI17 866 aaKnown RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 PATJQ8NI35 1801 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CLASP2O75122 1294 aaKnown RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 MOCS2O96007 188 aaPredicted RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CA9Q16790 459 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CYP4V2Q6ZWL3 525 aaPredicted RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CMASQ8NFW8 434 aaPredicted RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TEKT4Q8WW24 435 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TKTL2Q9H0I9 626 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TRPC7Q9HCX4 862 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 ASB3Q9Y575 518 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 MYO16Q9Y6X6 1858 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 CHD9Q3L8U1 2897 aa10.41□□□□□ -0.74
HMGB3-201ENST00000325307 TCRBV7S2A1N4TA0A589 114 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 RFXAPO00287 272 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 IRAK2O43187 625 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 ENDOD1O94919 500 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 MMRN1Q13201 1228 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 C11orf91Q3C1V1 193 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 ZNF697Q5TEC3 545 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 TADA2BQ86TJ2 420 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 CORO1BQ9BR76 489 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 WDR6Q9NNW5 1121 aaKnown RBP10.4□□□□□ -0.74
HMGB3-201ENST00000325307 TTC7AQ9ULT0 858 aaPredicted RBP10.4□□□□□ -0.74
HMGB3-201ENST00000325307 SLC12A8A0AV02 714 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 ZNF840PA6NDX5 716 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 CREB3O43889 395 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 RFPL2O75678 378 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 TJP3O95049 919 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 MYL4P12829 197 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 CCR1P32246 355 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 ADRA1BP35368 520 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 CDKN2BP42772 138 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 COPS2P61201 443 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 PDK2Q15119 407 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 DNAJC21Q5F1R6 531 aaKnown RBP10.4□□□□□ -0.74
HMGB3-201ENST00000325307 HECTD3Q5T447 861 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 ADGRD2Q7Z7M1 963 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 PYROXD2Q8N2H3 581 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 TTC16Q8NEE8 873 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 OVCA2Q8WZ82 227 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 PGAP3Q96FM1 320 aaPredicted RBP10.4□□□□□ -0.74
HMGB3-201ENST00000325307 TRMT2BQ96GJ1 504 aaKnown RBP10.4□□□□□ -0.74
HMGB3-201ENST00000325307 MYRFLQ96LU7 910 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 GCNAQ96QF7 691 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 MAGEB5Q9BZ81 275 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 SIK2Q9H0K1 926 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 PLEKHA4Q9H4M7 779 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 MED4Q9NPJ6 270 aa10.4□□□□□ -0.74
HMGB3-201ENST00000325307 FZD10Q9ULW2 581 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms