RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 TEX33O43247 280 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 STC2O76061 302 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 IGLV3-27P01718 113 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 CYP1A1P04798 512 aaPredicted RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 GSCP56915 257 aaPredicted RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 YWHAZP63104 245 aaKnown RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 TNK2Q07912 1038 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 NUGGCQ68CJ6 796 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 NOP9Q86U38 636 aaKnown RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 FAM217AQ8IXS0 508 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 CPXM2Q8N436 756 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 SYN2Q92777 582 aaPredicted RBP19.1■□□□□ 0.65
CLN3-259ENST00000637551 CPXM1Q96SM3 734 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 PDCL3Q9H2J4 239 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 WNT6Q9Y6F9 365 aa19.1■□□□□ 0.65
CLN3-259ENST00000637551 GVINP1Q7Z2Y8 2422 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 CBFA2T2O43439 604 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 GALR2O43603 387 aaPredicted RBP19.09■□□□□ 0.65
CLN3-259ENST00000637551 GFPT2O94808 682 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 TBX18O95935 607 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 CYP17A1P05093 508 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 PNMA6AP0CW24 399 aaPredicted RBP19.09■□□□□ 0.65
CLN3-259ENST00000637551 DRD1P21728 446 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 GJA4P35212 333 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 NBL1P41271 181 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 NOMO3P69849 1222 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 EFEMP1Q12805 493 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 TMEM196Q5HYL7 178 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 UNC45BQ8IWX7 931 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 SCUBE3Q8IX30 993 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 TMEM105Q8N8V8 129 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 BAP1Q92560 729 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 NAP1L5Q96NT1 182 aaPredicted RBP19.09■□□□□ 0.65
CLN3-259ENST00000637551 SLC2A13Q96QE2 648 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 CHRDQ9H2X0 955 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 AIPL1Q9NZN9 384 aa19.09■□□□□ 0.65
CLN3-259ENST00000637551 FAM170BA6NMN3 283 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 CALCAP01258 141 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 ARSAP15289 507 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 TARSP26639 723 aaKnown RBP19.08■□□□□ 0.64
CLN3-259ENST00000637551 PRKCIP41743 596 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 ID4P47928 161 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 HARS2P49590 506 aaKnown RBP19.08■□□□□ 0.64
CLN3-259ENST00000637551 GAD2Q05329 585 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 GRSF1Q12849 480 aaKnown RBP eCLIP19.08■□□□□ 0.64
CLN3-259ENST00000637551 CCINQ13939 588 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 UBXN2BQ14CS0 331 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 DHCR24Q15392 516 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 PTPN20Q4JDL3 420 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 TRIM68Q6AZZ1 485 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 OLFML1Q6UWY5 402 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 FAM149B1Q96BN6 582 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 C18orf8Q96DM3 657 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 ANP32EQ9BTT0 268 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 SYNCQ9H7C4 482 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 SPHK2Q9NRA0 654 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 WDR35Q9P2L0 1181 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 RASAL2Q9UJF2 1139 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 TLR6Q9Y2C9 796 aa19.08■□□□□ 0.64
CLN3-259ENST00000637551 BZW2Q9Y6E2 419 aaKnown RBP19.08■□□□□ 0.64
CLN3-259ENST00000637551 A0A0A0MRY4 1105 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 OTOL1A6NHN0 477 aaPredicted RBP19.07■□□□□ 0.64
CLN3-259ENST00000637551 STK25O00506 426 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 PAPSS2O95340 614 aaPredicted RBP19.07■□□□□ 0.64
CLN3-259ENST00000637551 IGLV3-25P01717 112 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 SLC2A3P11169 496 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 ADH5P11766 374 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 NCAM1P13591 858 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 FMO1Q01740 532 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 SLC6A3Q01959 620 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 CENPCQ03188 943 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 FZD5Q13467 585 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 TRIM14Q14142 442 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 ACBD5Q5T8D3 534 aaPredicted RBP19.07■□□□□ 0.64
CLN3-259ENST00000637551 ERICH1Q86X53 443 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 MIB1Q86YT6 1006 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 GPIHBP1Q8IV16 184 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 BBS7Q8IWZ6 715 aa19.07■□□□□ 0.64
CLN3-259ENST00000637551 ZNF557Q8N988 423 aaPredicted RBP19.07■□□□□ 0.64
CLN3-259ENST00000637551 CACNA1IQ9P0X4 2223 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 MYOFQ9NZM1 2061 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 CAPN9O14815 690 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 IRAK2O43187 625 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 DAB1O75553 588 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 FYNP06241 537 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 MMEP08473 750 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 CHRNB1P11230 501 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 UNGP13051 313 aaPredicted RBP19.06■□□□□ 0.64
CLN3-259ENST00000637551 MMP8P22894 467 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 EIF4EBP2Q13542 120 aaPredicted RBP19.06■□□□□ 0.64
CLN3-259ENST00000637551 E2F5Q15329 346 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 HSF5Q4G112 596 aaPredicted RBP19.06■□□□□ 0.64
CLN3-259ENST00000637551 RHBDF2Q6PJF5 856 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 NUDT18Q6ZVK8 323 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 PASD1Q8IV76 773 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 DTWD2Q8NBA8 298 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 KCNV2Q8TDN2 545 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 DQX1Q8TE96 717 aaKnown RBP19.06■□□□□ 0.64
CLN3-259ENST00000637551 CD101Q93033 1021 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms