RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NDUFA8P51970 172 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 KIAA1324Q6UXG2 1013 aaKnown RBP17.73■□□□□ 0.43
CLN3-211ENST00000564091 CCDC186Q7Z3E2 898 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 FAM186BQ8IYM0 893 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 KDF1Q8NAX2 398 aaPredicted RBP17.73■□□□□ 0.43
CLN3-211ENST00000564091 HEXIM2Q96MH2 286 aaKnown RBP17.73■□□□□ 0.43
CLN3-211ENST00000564091 RASAL2Q9UJF2 1139 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 FBXO10Q9UK96 956 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 USP3Q9Y6I4 520 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 MYO16Q9Y6X6 1858 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 MYOFQ9NZM1 2061 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 KIAA1549LQ6ZVL6 1849 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 HELZP42694 1942 aaKnown RBP17.72■□□□□ 0.43
CLN3-211ENST00000564091 THADAQ6YHU6 1953 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 ARHGAP33O14559 1287 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 OPHN1O60890 802 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 RHOBTB3O94955 611 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 RALAP11233 206 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 KRT13P13646 458 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 SYKP43405 635 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 FAM193AP78312 1265 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 EFEMP1Q12805 493 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 ADAM9Q13443 819 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 TADA2BQ86TJ2 420 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 RGL4Q8IZJ4 473 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 MINDY1Q8N5J2 469 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 SEMA4DQ92854 862 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 GATA6Q92908 595 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 ZNF419Q96HQ0 510 aaPredicted RBP17.72■□□□□ 0.43
CLN3-211ENST00000564091 SPATA32Q96LK8 384 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 STON1Q9Y6Q2 735 aa17.72■□□□□ 0.43
CLN3-211ENST00000564091 ASCC3Q8N3C0 2202 aaKnown RBP17.71■□□□□ 0.43
CLN3-211ENST00000564091 A0A1W2PQD8 194 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 UPK3BL1B0FP48 263 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 UPK3BL2E5RIL1 263 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 GFRA2O00451 464 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 NDUFS2O75306 463 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 PENKP01210 267 aaPredicted RBP17.71■□□□□ 0.43
CLN3-211ENST00000564091 MAOBP27338 520 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 PSMC2P35998 433 aaKnown RBP17.71■□□□□ 0.43
CLN3-211ENST00000564091 PSEN1P49768 467 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 MFAP3P55082 362 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 DPYDQ12882 1025 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 NFIL3Q16649 462 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 GEN1Q17RS7 908 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 FUT11Q495W5 492 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 FYB2Q5VWT5 728 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 CCDC150Q8NCX0 1101 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 CCDC47Q96A33 483 aaKnown RBP17.71■□□□□ 0.43
CLN3-211ENST00000564091 EEF2KMTQ96G04 330 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 TMEM8AQ9HCN3 771 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 CLIC5Q9NZA1 410 aa17.71■□□□□ 0.43
CLN3-211ENST00000564091 ZFYVE26Q68DK2 2539 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 CD59P13987 128 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 RPL13P26373 211 aaKnown RBP17.7■□□□□ 0.42
CLN3-211ENST00000564091 CORO1AP31146 461 aaKnown RBP17.7■□□□□ 0.42
CLN3-211ENST00000564091 IL12RB1P42701 662 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 COG7P83436 770 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 PLEKHG6Q3KR16 790 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 KRT39Q6A163 491 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 RABEPKQ7Z6M1 372 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 ZNF276Q8N554 614 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 ARID3AQ99856 593 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 MKRN2Q9H000 416 aaKnown RBP17.7■□□□□ 0.42
CLN3-211ENST00000564091 THAP10Q9P2Z0 257 aaPredicted RBP17.7■□□□□ 0.42
CLN3-211ENST00000564091 KLK13Q9UKR3 277 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 AGO1Q9UL18 857 aaKnown RBP17.7■□□□□ 0.42
CLN3-211ENST00000564091 CLEC4EQ9ULY5 219 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 ZNF510Q9Y2H8 683 aa17.7■□□□□ 0.42
CLN3-211ENST00000564091 AKAP13Q12802 2813 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 FAM237AA0A1B0GTK4 181 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 SYPP08247 313 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 CD6P30203 668 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 CHKAP35790 457 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 STARD3Q14849 445 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 ZCWPW2Q504Y3 356 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 SYCP2LQ5T4T6 812 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 PIGZQ86VD9 579 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 DENND1CQ8IV53 801 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 GUF1Q8N442 669 aaKnown RBP17.69■□□□□ 0.42
CLN3-211ENST00000564091 SLC4A11Q8NBS3 891 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 NDRG1Q92597 394 aaKnown RBP17.69■□□□□ 0.42
CLN3-211ENST00000564091 TOE1Q96GM8 510 aaKnown RBP17.69■□□□□ 0.42
CLN3-211ENST00000564091 TMEM176AQ96HP8 235 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 CAMK1GQ96NX5 476 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 CDK5RAP1Q96SZ6 601 aaKnown RBP17.69■□□□□ 0.42
CLN3-211ENST00000564091 DCLK3Q9C098 648 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 PRDM16Q9HAZ2 1276 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 CISHQ9NSE2 258 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 SLC27A6Q9Y2P4 619 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 ZDHHC9Q9Y397 364 aa17.69■□□□□ 0.42
CLN3-211ENST00000564091 MYO18AQ92614 2054 aaKnown RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 SLC12A8A0AV02 714 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 LAMA5O15230 3695 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 SH3BP5O60239 455 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 GTF2H1P32780 548 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 RAD23BP54727 409 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 YWHAGP61981 247 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLN3-211ENST00000564091 KRT85P78386 507 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 ENPEPQ07075 957 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms