RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PLA2G4AP47712 749 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 SHC2P98077 582 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 GOLGA8FQ08AF8 430 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 GOLGA8DPQ0D2H9 430 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 PREPLQ4J6C6 727 aaPredicted RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 DAB2IPQ5VWQ8 1189 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 KRT39Q6A163 491 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 KLHDC10Q6PID8 442 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 CCDC186Q7Z3E2 898 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 TRMT11Q7Z4G4 463 aaKnown RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 CHPFQ8IZ52 775 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 KCNV2Q8TDN2 545 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 TATDN2Q93075 761 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 HEXIM2Q96MH2 286 aaKnown RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 XPO6Q96QU8 1125 aaKnown RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 DUSP16Q9BY84 665 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 SLC6A17Q9H1V8 727 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 CD93Q9NPY3 652 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 MARK1Q9P0L2 795 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 WDR35Q9P2L0 1181 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 EVLQ9UI08 416 aaPredicted RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 LSM7Q9UK45 103 aaKnown RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 RAD54BQ9Y620 910 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 USP3Q9Y6I4 520 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 KMT2BQ9UMN6 2715 aaPredicted RBP12.23□□□□□ -0.45
USP3-220ENST00000561381 WASH3PC4AMC7 463 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 TOP3BO95985 862 aaKnown RBP12.23□□□□□ -0.45
USP3-220ENST00000561381 HMBSP08397 361 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 NDUFV2P19404 249 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 GTF2H1P32780 548 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 MAPK8P45983 427 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 DGKGP49619 791 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 RAD23BP54727 409 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 RPL6Q02878 288 aaKnown RBP12.23□□□□□ -0.45
USP3-220ENST00000561381 ENPEPQ07075 957 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 ZNF252P-AS1Q0IIN9 211 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 LYSMD4Q5XG99 296 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 NUDT18Q6ZVK8 323 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 SYT12Q8IV01 421 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 SLC4A11Q8NBS3 891 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 CCDC150Q8NCX0 1101 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 IPO4Q8TEX9 1081 aaKnown RBP12.23□□□□□ -0.45
USP3-220ENST00000561381 CISHQ9NSE2 258 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 CACNA2D2Q9NY47 1150 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 RASAL2Q9UJF2 1139 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 PILRBQ9UKJ0 227 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 CEP192Q8TEP8 1941 aa12.23□□□□□ -0.45
USP3-220ENST00000561381 ADAMTS9Q9P2N4 1935 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 IGHV1OR15-9A0A0B4J2B8 117 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 TULP2O00295 520 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 ARHGAP33O14559 1287 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CFIP05156 583 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 RALAP11233 206 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 ENGP17813 658 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 SPINK2P20155 84 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CORO1AP31146 461 aaKnown RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 MXI1P50539 228 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 MCCD1P59942 119 aaPredicted RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 EFEMP1Q12805 493 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 PNOCQ13519 176 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 BYSLQ13895 437 aaKnown RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 EDRF1Q3B7T1 1238 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CBWD6Q4V339 395 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CBWD3Q5JTY5 395 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CBWD5Q5RIA9 395 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 PIGZQ86VD9 579 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 FBXL13Q8NEE6 735 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 DEFB124Q8NES8 71 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 NDRG1Q92597 394 aaKnown RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 TMEM176AQ96HP8 235 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 GABRG3Q99928 467 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 NUSAP1Q9BXS6 441 aaKnown RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 SCAND2PQ9GZW5 306 aaPredicted RBP12.22□□□□□ -0.45
USP3-220ENST00000561381 RAB20Q9NX57 234 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 FBXO10Q9UK96 956 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CYP8B1Q9UNU6 501 aa12.22□□□□□ -0.45
USP3-220ENST00000561381 CACNA1EQ15878 2313 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 AP5Z1O43299 807 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 PENKP01210 267 aaPredicted RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 EPB41P11171 864 aaKnown RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 PRCPP42785 496 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 PMS1P54277 932 aaKnown RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 ZNF33AQ06730 810 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 LMAN2Q12907 356 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 FOXC1Q12948 553 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 SPDYCQ5MJ68 293 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 PPP1R15BQ5SWA1 713 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 FYB2Q5VWT5 728 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 PEAR1Q5VY43 1037 aaPredicted RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 ARHGAP17Q68EM7 881 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 SDE2Q6IQ49 451 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 SLC23A3Q6PIS1 610 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 SLC41A1Q8IVJ1 513 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 ZNF276Q8N554 614 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 OR2I1PQ8NGU4 316 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 ERCC4Q92889 916 aaPredicted RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 MRGPRX1Q96LB2 322 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 CLIC5Q9NZA1 410 aa12.21□□□□□ -0.45
USP3-220ENST00000561381 AGO1Q9UL18 857 aaKnown RBP12.21□□□□□ -0.45
USP3-220ENST00000561381 CLEC4EQ9ULY5 219 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms