RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 PLA2G4AP47712 749 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 SHC2P98077 582 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 GOLGA8FQ08AF8 430 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 GOLGA8DPQ0D2H9 430 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 PREPLQ4J6C6 727 aaPredicted RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 DAB2IPQ5VWQ8 1189 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 KRT39Q6A163 491 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 KLHDC10Q6PID8 442 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 CCDC186Q7Z3E2 898 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 TRMT11Q7Z4G4 463 aaKnown RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 CHPFQ8IZ52 775 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 KCNV2Q8TDN2 545 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 TATDN2Q93075 761 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 HEXIM2Q96MH2 286 aaKnown RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 XPO6Q96QU8 1125 aaKnown RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 DUSP16Q9BY84 665 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 SLC6A17Q9H1V8 727 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 CD93Q9NPY3 652 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 MARK1Q9P0L2 795 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 WDR35Q9P2L0 1181 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 EVLQ9UI08 416 aaPredicted RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 LSM7Q9UK45 103 aaKnown RBP12.24□□□□□ -0.45
USP3-214ENST00000559718 RAD54BQ9Y620 910 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 USP3Q9Y6I4 520 aa12.24□□□□□ -0.45
USP3-214ENST00000559718 KMT2BQ9UMN6 2715 aaPredicted RBP12.23□□□□□ -0.45
USP3-214ENST00000559718 WASH3PC4AMC7 463 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 TOP3BO95985 862 aaKnown RBP12.23□□□□□ -0.45
USP3-214ENST00000559718 HMBSP08397 361 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 NDUFV2P19404 249 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 GTF2H1P32780 548 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 MAPK8P45983 427 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 DGKGP49619 791 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 RAD23BP54727 409 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 RPL6Q02878 288 aaKnown RBP12.23□□□□□ -0.45
USP3-214ENST00000559718 ENPEPQ07075 957 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 ZNF252P-AS1Q0IIN9 211 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 LYSMD4Q5XG99 296 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 NUDT18Q6ZVK8 323 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 SYT12Q8IV01 421 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 SLC4A11Q8NBS3 891 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 CCDC150Q8NCX0 1101 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 IPO4Q8TEX9 1081 aaKnown RBP12.23□□□□□ -0.45
USP3-214ENST00000559718 CISHQ9NSE2 258 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 CACNA2D2Q9NY47 1150 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 RASAL2Q9UJF2 1139 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 PILRBQ9UKJ0 227 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 CEP192Q8TEP8 1941 aa12.23□□□□□ -0.45
USP3-214ENST00000559718 ADAMTS9Q9P2N4 1935 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 IGHV1OR15-9A0A0B4J2B8 117 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 TULP2O00295 520 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CFIP05156 583 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 RALAP11233 206 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 ENGP17813 658 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 SPINK2P20155 84 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CORO1AP31146 461 aaKnown RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 MXI1P50539 228 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 MCCD1P59942 119 aaPredicted RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 EFEMP1Q12805 493 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 PNOCQ13519 176 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 BYSLQ13895 437 aaKnown RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 EDRF1Q3B7T1 1238 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CBWD6Q4V339 395 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CBWD3Q5JTY5 395 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CBWD5Q5RIA9 395 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 PIGZQ86VD9 579 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 FBXL13Q8NEE6 735 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 DEFB124Q8NES8 71 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 NDRG1Q92597 394 aaKnown RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 TMEM176AQ96HP8 235 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 GABRG3Q99928 467 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 NUSAP1Q9BXS6 441 aaKnown RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 SCAND2PQ9GZW5 306 aaPredicted RBP12.22□□□□□ -0.45
USP3-214ENST00000559718 RAB20Q9NX57 234 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 FBXO10Q9UK96 956 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CYP8B1Q9UNU6 501 aa12.22□□□□□ -0.45
USP3-214ENST00000559718 CACNA1EQ15878 2313 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 AP5Z1O43299 807 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 PENKP01210 267 aaPredicted RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 EPB41P11171 864 aaKnown RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 PRCPP42785 496 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 PMS1P54277 932 aaKnown RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 ZNF33AQ06730 810 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 LMAN2Q12907 356 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 FOXC1Q12948 553 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 SPDYCQ5MJ68 293 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 PPP1R15BQ5SWA1 713 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 FYB2Q5VWT5 728 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 PEAR1Q5VY43 1037 aaPredicted RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 ARHGAP17Q68EM7 881 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 SDE2Q6IQ49 451 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 SLC23A3Q6PIS1 610 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 SLC41A1Q8IVJ1 513 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 ZNF276Q8N554 614 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 OR2I1PQ8NGU4 316 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 ERCC4Q92889 916 aaPredicted RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 MRGPRX1Q96LB2 322 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 CLIC5Q9NZA1 410 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 AGO1Q9UL18 857 aaKnown RBP12.21□□□□□ -0.45
USP3-214ENST00000559718 CLEC4EQ9ULY5 219 aa12.21□□□□□ -0.45
USP3-214ENST00000559718 PCNX2A6NKB5 2137 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms