RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 CBX2Q14781 532 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 KCTD19Q17RG1 926 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 CTC1Q2NKJ3 1217 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 MON1AQ86VX9 555 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SCML4Q8N228 414 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 RIN3Q8TB24 985 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 DQX1Q8TE96 717 aaKnown RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 TRMT2BQ96GJ1 504 aaKnown RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 FBXO44Q9H4M3 255 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 GKN1Q9NS71 199 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 PIGVQ9NUD9 493 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 GPATCH2LQ9NWQ4 482 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 CLDND1Q9NY35 253 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SNX10Q9Y5X0 201 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 TMEM265A0A087WTH1 108 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 PI4K2BG5E9Z4 385 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 CAPN9O14815 690 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 POU3F3P20264 500 aaPredicted RBP11.22□□□□□ -0.61
TDP1-211ENST00000555178 SLC1A1P43005 524 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 NME3Q13232 169 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 VEPH1Q14D04 833 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 PRSS36Q5K4E3 855 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 BTBD8Q5XKL5 378 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 ANKRD54Q6NXT1 300 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 SCYL2Q6P3W7 929 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 BNIPLQ7Z465 357 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 DEFB123Q8N688 67 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 IRGQQ8WZA9 623 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 SMG7Q92540 1137 aaKnown RBP11.22□□□□□ -0.61
TDP1-211ENST00000555178 NT5C3BQ969T7 300 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 HERPUD2Q9BSE4 406 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 XPO7Q9UIA9 1087 aaKnown RBP11.22□□□□□ -0.61
TDP1-211ENST00000555178 MAFFQ9ULX9 164 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 PCDHA3Q9Y5H8 950 aa11.22□□□□□ -0.61
TDP1-211ENST00000555178 SPDYE4A6NLX3 237 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 M0QYT0 321 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 RIOK3O14730 519 aaKnown RBP11.21□□□□□ -0.61
TDP1-211ENST00000555178 COCHO43405 550 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 HMBSP08397 361 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 PYGMP11217 842 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CEBPBP17676 345 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CTNNA2P26232 953 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 NOS2P35228 1153 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 GGCXP38435 758 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 PTPN9P43378 593 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 EFEMP1Q12805 493 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 EIF4EBP2Q13542 120 aaPredicted RBP11.21□□□□□ -0.61
TDP1-211ENST00000555178 TEAD2Q15562 447 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 TAF12Q16514 161 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 SLC25A52Q3SY17 297 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 TMEM184AQ6ZMB5 413 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 FAM131BQ86XD5 332 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 MIB1Q86YT6 1006 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CREG2Q8IUH2 290 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CCDC185Q8N715 623 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 ARL14EPQ8N8R7 260 aaPredicted RBP11.21□□□□□ -0.61
TDP1-211ENST00000555178 MAB21L3Q8N8X9 362 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CALR3Q96L12 384 aaKnown RBP11.21□□□□□ -0.61
TDP1-211ENST00000555178 SLC46A2Q9BY10 475 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 S1PR5Q9H228 398 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 TRPC7Q9HCX4 862 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 WDR6Q9NNW5 1121 aaKnown RBP11.21□□□□□ -0.61
TDP1-211ENST00000555178 ASNSD1Q9NWL6 643 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 CDC23Q9UJX2 597 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 USP18Q9UMW8 372 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 VCANP13611 3396 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 NUP205Q92621 2012 aa11.21□□□□□ -0.61
TDP1-211ENST00000555178 H3BQ06 376 aaPredicted RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 SART1O43290 800 aaKnown RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 CEP104O60308 925 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 TLR5O60602 858 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 TRUB2O95900 331 aaKnown RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 IGLV3-25P01717 112 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 GLI1P08151 1106 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 CD48P09326 243 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 PTPN2P17706 415 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 EPHA5P54756 1037 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 CA9Q16790 459 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 ARCQ7LC44 396 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 ADAT2Q7Z6V5 191 aaKnown RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 RHOT1Q8IXI2 618 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 ADAMTS19Q8TE59 1207 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 RAPGEF5Q92565 580 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 HSPH1Q92598 858 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 CENPIQ92674 756 aaPredicted RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 ZFRQ96KR1 1074 aaKnown RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 SLITRK1Q96PX8 696 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 ATXN3LQ9H3M9 355 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 L2HGDHQ9H9P8 463 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 TLR8Q9NR97 1041 aaKnown RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 ABCC13Q9NSE7 274 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 SMPD4Q9NXE4 827 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 ZDHHC7Q9NXF8 308 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 LMCD1Q9NZU5 365 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 CCL26Q9Y258 94 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 NUP210Q8TEM1 1887 aaPredicted RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 KIF26AQ9ULI4 1882 aaPredicted RBP11.21□□□□□ -0.62
TDP1-211ENST00000555178 DOCK4Q8N1I0 1966 aa11.21□□□□□ -0.62
TDP1-211ENST00000555178 MYO10Q9HD67 2058 aa11.2□□□□□ -0.62
TDP1-211ENST00000555178 TCRBV7S2A1N4TA0A589 114 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms