RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CASP5P51878 434 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 CYP4F3Q08477 520 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 WDR45BQ5MNZ6 344 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GRAMD4Q6IC98 578 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 SDE2Q6IQ49 451 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GLIS3Q8NEA6 775 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 MRGPRX1Q96LB2 322 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 MMS19Q96T76 1030 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GABRG3Q99928 467 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 ZDHHC5Q9C0B5 715 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 ZNF518BQ9C0D4 1074 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 DPEP3Q9H4B8 488 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 CCSER2Q9H7U1 834 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 ZNF395Q9H8N7 513 aaPredicted RBP11.13□□□□□ -0.63
VPS29-208ENST00000550267 DNAJC17Q9NVM6 304 aaKnown RBP11.13□□□□□ -0.63
VPS29-208ENST00000550267 INTS13Q9NVM9 706 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 CACNA2D2Q9NY47 1150 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 KIAA1522Q9P206 1035 aaPredicted RBP11.13□□□□□ -0.63
VPS29-208ENST00000550267 CHORDC1Q9UHD1 332 aaPredicted RBP11.13□□□□□ -0.63
VPS29-208ENST00000550267 CEP192Q8TEP8 1941 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GCN1Q92616 2671 aaKnown RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 PCNX2A6NKB5 2137 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 CACNA1EQ15878 2313 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 A0A1B0GTW7 788 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 MEI4A8MW99 385 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 WASH3PC4AMC7 463 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 PRRT4C9JH25 899 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 TNNC2P02585 160 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 ATXN1LP0C7T5 689 aaKnown RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 LONP1P36776 959 aaKnown RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 SYCP3Q8IZU3 236 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 NUP93Q8N1F7 819 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 ZCCHC9Q8N567 271 aaKnown RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 PDZD8Q8NEN9 1154 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 OR6B3Q8NGW1 331 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 BAHD1Q8TBE0 780 aaPredicted RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 FBXO32Q969P5 355 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 B3GNT5Q9BYG0 378 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 FGFBP2Q9BYJ0 223 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 TRIM9Q9C026 710 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 MIR1-1HGQ9H1L0 117 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 SNX25Q9H3E2 840 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 GAREM1Q9H706 876 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 PRDM16Q9HAZ2 1276 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 DKK4Q9UBT3 224 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 SEL1LQ9UBV2 794 aa11.12□□□□□ -0.63
VPS29-208ENST00000550267 DNMT3AQ9Y6K1 912 aaPredicted RBP11.12□□□□□ -0.63
VPS29-208ENST00000550267 TRABD2BA6NFA1 517 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 NEDD8-MDP1E9PL57 170 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 CILPO75339 1184 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 NCAM1P13591 858 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 PTPN1P18031 435 aaKnown RBP11.11□□□□□ -0.63
VPS29-208ENST00000550267 CD6P30203 668 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 GNL1P36915 607 aaPredicted RBP11.11□□□□□ -0.63
VPS29-208ENST00000550267 BNC1Q01954 994 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 HECTD3Q5T447 861 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 GPD1LQ8N335 351 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 SCAMP5Q8TAC9 235 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 RHBDD1Q8TEB9 315 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 SCFD1Q8WVM8 642 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 DNASE2BQ8WZ79 361 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 OVCA2Q8WZ82 227 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 TOE1Q96GM8 510 aaKnown RBP11.11□□□□□ -0.63
VPS29-208ENST00000550267 GPR174Q9BXC1 333 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 ELOVL4Q9GZR5 314 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 TMPRSS4Q9NRS4 437 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 TM7SF3Q9NS93 570 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 FNDC3AQ9Y2H6 1198 aaKnown RBP11.11□□□□□ -0.63
VPS29-208ENST00000550267 IGSF10Q6WRI0 2623 aa11.11□□□□□ -0.63
VPS29-208ENST00000550267 CELSR3Q9NYQ7 3312 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 A0A087WV48 116 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 FAM149AA5PLN7 773 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 H3BQV1 296 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 CACNG3O60359 315 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 LILRA1O75019 489 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 TACC1O75410 805 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 PRPF6O94906 941 aaKnown RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 DKK1O94907 266 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 RTN3O95197 1032 aaPredicted RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 CER1O95813 267 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 CST3P01034 146 aaPredicted RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 TYRP14679 529 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 GAP43P17677 238 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 MATKP42679 507 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 MARSP56192 900 aaKnown RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 C19orf57Q0VDD7 668 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 DUOXA2Q1HG44 320 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 HLA-BQ31612 363 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 DCAF12L1Q5VU92 463 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 TPGS1Q6ZTW0 290 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 USP49Q70CQ1 688 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 CBWD2Q8IUF1 395 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 DNAJC19Q96DA6 116 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 EPSTI1Q96J88 318 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 XPO6Q96QU8 1125 aaKnown RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 KCNK16Q96T55 309 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 DUSP9Q99956 384 aaKnown RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 BBS2Q9BXC9 721 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 WSB2Q9NYS7 404 aaPredicted RBP11.1□□□□□ -0.63
VPS29-208ENST00000550267 GMIPQ9P107 970 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms