RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 PMM2O15305 246 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 CASP5P51878 434 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 COPS5Q92905 334 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 NCLNQ969V3 563 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 CNGB3Q9NQW8 809 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 COL2A1P02458 1487 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 TRIM49D1C9J1S8 452 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 TGFB1I1O43294 461 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 ATP5BP06576 529 aaKnown RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 KLRC2P26717 231 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 TUSC3Q13454 348 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 SPANXN3Q5MJ09 141 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 DEFB128Q7Z7B8 93 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 KIAA0319LQ8IZA0 1049 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 FBXO36Q8NEA4 188 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 CD274Q9NZQ7 290 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 CDYLQ9Y232 598 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 BAZ2BQ9UIF8 2168 aaKnown RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 ARHGAP10A1A4S6 786 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 TMEM150BA6NC51 233 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 ZSCAN5CA6NGD5 496 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 MPOP05164 745 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 STMN1P16949 149 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 IL10P22301 178 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 FLT3LGP49771 235 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 DNAJC3Q13217 504 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 PPM1LQ5SGD2 360 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 C1orf146Q5VVC0 180 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 OTUB1Q96FW1 271 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 NTPCRQ9BSD7 190 aaKnown RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 MRPL1Q9BYD6 325 aaKnown RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 ZCCHC2Q9C0B9 1178 aaKnown RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 MANSC1Q9H8J5 431 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 GID8Q9NWU2 228 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 SCOCQ9UIL1 159 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 PLA2G4CQ9UP65 541 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 EFR3BQ9Y2G0 817 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 SLC4A7Q9Y6M7 1214 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 TTLL13PA6NNM8 815 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SMIM22K7EJ46 135 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CAND2O75155 1236 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 FAM163BP0C2L3 166 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 MAP2K2P36507 400 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ATP5C1P36542 298 aaKnown RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 USP41Q3LFD5 358 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ARSHQ5FYA8 562 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 WDR59Q6PJI9 974 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CCDC138Q96M89 665 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 TLR10Q9BXR5 811 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 STN1Q9H668 368 aaKnown RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SEPT3Q9UH03 358 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 DNPEPQ9ULA0 475 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ST3GAL5Q9UNP4 418 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF510Q9Y2H8 683 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 DUSP10Q9Y6W6 482 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CCDC195A0A1B0GUA6 201 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 JCHAINP01591 159 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CKBP12277 381 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CHRM3P20309 590 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 POLR2LP62875 67 aaKnown RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 INPP5AQ14642 412 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 KCNT1Q5JUK3 1230 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 DENND5BQ6ZUT9 1274 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 TTC30AQ86WT1 665 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SLC22A9Q8IVM8 553 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 EMC1Q8N766 993 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CCT8L2Q96SF2 557 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 PRMT1Q99873 361 aaKnown RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ETNK1Q9HBU6 452 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 FAM105AQ9NUU6 356 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 RAB21Q9UL25 225 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SEPT4O43236 478 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 MGEA5O60502 916 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 FAM107AO95990 144 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 H2AFXP16104 143 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 TNFRSF8P28908 595 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ORC1Q13415 861 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 HIC1Q14526 733 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 AASDHQ4L235 1098 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 LRRC43Q8N309 656 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 COLGALT1Q8NBJ5 622 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 B3GALNT2Q8NCR0 500 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SPPL2BQ8TCT7 592 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 SIKE1Q9BRV8 207 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF670Q9BS34 389 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ILKAPQ9H0C8 392 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 EPC1Q9H2F5 836 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 ABCF3Q9NUQ8 709 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 RBM22Q9NW64 420 aaKnown RBP eCLIP12.32□□□□□ -0.442e-6■■■□□ 18.7
PTPRF-205ENST00000414879 MAPK1P28482 360 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 MIPP30301 263 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 DRG2P55039 364 aaKnown RBP12.32□□□□□ -0.44
PTPRF-205ENST00000414879 LRRC14Q15048 493 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 NBPF20Q3BBV1 942 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CARNMT1Q8N4J0 409 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 BAP1Q92560 729 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 MAML3Q96JK9 1138 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 CLPBQ9H078 707 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms