RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 H7C0S8 307 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 NR3C2P08235 984 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ALX1Q15699 326 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ALG11Q2TAA5 492 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 RPTNQ6XPR3 784 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 FAM120BQ96EK7 910 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CLCC1Q96S66 551 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PRKD2Q9BZL6 878 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 TMEM39BQ9GZU3 492 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ILKAPQ9H0C8 392 aaPredicted RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PIF1Q9H611 641 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 GPRC5DQ9NZD1 345 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 EXTL3O43909 919 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 VAC14Q08AM6 782 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ITGA9Q13797 1035 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 SLC45A4Q5BKX6 768 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 FAM228AQ86W67 206 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 FMR1NBQ8N0W7 255 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ACSF2Q96CM8 615 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ERP27Q96DN0 273 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MTFR1LQ9H019 292 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 TNFSF13BQ9Y275 285 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ZDHHC9Q9Y397 364 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 CAMTA2O94983 1202 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PIK3R1P27986 724 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MAGEA4P43358 317 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MARSP56192 900 aaKnown RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PDZK1Q5T2W1 519 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 CHST13Q8NET6 341 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MDM1Q8TC05 714 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MS4A14Q96JA4 679 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PNMA5Q96PV4 448 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 WDR24Q96S15 920 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 FICDQ9BVA6 458 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 IRX2Q9BZI1 471 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 UBE2OQ9C0C9 1292 aaKnown RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 STARD7Q9NQZ5 370 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PRODHO43272 600 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 VPS4BO75351 444 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 OR6B1O95007 311 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MFN2O95140 757 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 AMD1P17707 334 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 LSP1P33241 339 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 COPAP53621 1224 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 MTF1Q14872 753 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PMF1Q6P1K2 205 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 DEFB132Q7Z7B7 95 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 PROSER1Q86XN7 944 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 DDHD1Q8NEL9 900 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 NEK7Q8TDX7 302 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 CLIP3Q96DZ5 547 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 NIF3L1Q9GZT8 377 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ACTR8Q9H981 624 aa10.46□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF624Q9P2J8 865 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-202ENST00000358808 TNS2Q63HR2 1409 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 IQCMA0A1B0GVH7 501 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 TBKBP1A7MCY6 615 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 MEI4A8MW99 385 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 UBE2Q2LH0YL09 131 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 WWP2O00308 870 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 CDH16O75309 829 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 KLHL17Q6TDP4 642 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 PPIL6Q8IXY8 311 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 SNRNP27Q8WVK2 155 aaKnown RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 REXO5Q96IC2 774 aaKnown RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 MTMR4Q9NYA4 1195 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 VAV3Q9UKW4 847 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 USP15Q9Y4E8 981 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 PNPLA7Q6ZV29 1317 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 ATMINO43313 823 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 MPOP05164 745 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 SLC2A4P14672 509 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 TCF7P36402 384 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 GLRBP48167 497 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 FMO5P49326 533 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 SERPINB8P50452 374 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 ITGADQ13349 1161 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 FAXCQ5TGI0 409 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 FBXO42Q6P3S6 717 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 MB21D2Q8IYB1 491 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 CCDC33Q8N5R6 958 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 LPCAT1Q8NF37 534 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 SPPL2AQ8TCT8 520 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 TMEM159Q96B96 161 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 CCDC126Q96EE4 140 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 IL17RAQ96F46 866 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 TPD52L3Q96J77 140 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 CNPPD1Q9BV87 410 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 MIR1-1HGQ9H1L0 117 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 PPCSQ9HAB8 311 aa10.46□□□□□ -0.74
CLIP1-202ENST00000358808 GPN3Q9UHW5 284 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-202ENST00000358808 TTC26A0AVF1 554 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CYB561D2O14569 222 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 TRIM66O15016 1216 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 MGRN1O60291 552 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NDUFB10O96000 172 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CRYMQ14894 314 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 FGD3Q5JSP0 725 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 KCTD14Q9BQ13 255 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 PRRG4Q9BZD6 226 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms