RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 DENND1CQ8IV53 801 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 ALG3Q92685 438 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 RPGRIP1Q96KN7 1286 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TKTL2Q9H0I9 626 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 ADAM7Q9H2U9 754 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TTLL3Q9Y4R7 772 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 C2CD4BA6NLJ0 364 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 LCA5LO95447 670 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 GLP2RO95838 553 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 RALAP11233 206 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 HMGA1P17096 107 aaKnown RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 SMAD3P84022 425 aaKnown RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 PRPF38BQ5VTL8 546 aaKnown RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 LEKR1Q6ZMV7 388 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 TXLNBQ8N3L3 684 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 KCTD6Q8NC69 237 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 TRIM58Q8NG06 486 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 FAXDC2Q96IV6 333 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 ZSWIM3Q96MP5 696 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 NSUN3Q9H649 340 aaKnown RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 WDCPQ9H6R7 721 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 CSNK1G1Q9HCP0 422 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 VANGL2Q9ULK5 521 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 STAP1Q9ULZ2 295 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 USP18Q9UMW8 372 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 HEY1Q9Y5J3 304 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 MYO18AQ92614 2054 aaKnown RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 GOLGA6L7A0A1B0GV03 622 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 C5orf67F2Z3F1 127 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 COCHO43405 550 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 DESP17661 470 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 CDH5P33151 784 aaPredicted RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 BMP8BP34820 402 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 MATKP42679 507 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 RGS19P49795 217 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 C10orf76Q5T2E6 689 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 MON1AQ86VX9 555 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 TCEAL8Q8IYN2 117 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 WBP2Q969T9 261 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 PEBP4Q96S96 227 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 NAPGQ99747 312 aaPredicted RBP9.59□□□□□ -0.87
USP4-202ENST00000351842 UVRAGQ9P2Y5 699 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 IP6K2Q9UHH9 426 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 CPQQ9Y646 472 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 NOTCH4Q99466 2003 aa9.59□□□□□ -0.87
USP4-202ENST00000351842 FRYLO94915 3013 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ZNF840PA6NDX5 716 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 MYBL1P10243 752 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 HDAC4P56524 1084 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 IFI16Q16666 785 aaKnown RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 HECTD3Q5T447 861 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 SYCP2LQ5T4T6 812 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 SLC26A9Q7LBE3 791 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 KIF18AQ8NI77 898 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 RAPGEF5Q92565 580 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 C8orf48Q96LL4 319 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 CDX2Q99626 313 aaPredicted RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 RXFP1Q9HBX9 757 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ANLNQ9NQW6 1124 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ASNSD1Q9NWL6 643 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 MPP6Q9NZW5 540 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 WDR35Q9P2L0 1181 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ZNF638Q14966 1978 aaKnown RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 XYLBO75191 536 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 TBX10O75333 385 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ZMYND10O75800 440 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 PROSCO94903 275 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 RTN3O95197 1032 aaPredicted RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 CEBPBP17676 345 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ATP5C1P36542 298 aaKnown RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 VPS41P49754 854 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 UBE3AQ05086 875 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 RAP1GAP2Q684P5 730 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 LILRA6Q6PI73 481 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 SND1Q7KZF4 910 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP4-202ENST00000351842 ITIH5Q86UX2 942 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ARFGAP1Q8N6T3 406 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 PSMG2Q969U7 264 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 CNPY3Q9BT09 278 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 FNIP2Q9P278 1114 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 TMEM59LQ9UK28 342 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 MFHAS1Q9Y4C4 1052 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 GOLGA6L9A6NEM1 432 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 TUBB4AP04350 444 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 RARAP10276 462 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 CTNNA2P26232 953 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ZNF143P52747 638 aaPredicted RBP9.58□□□□□ -0.88
USP4-202ENST00000351842 ATG4AQ8WYN0 398 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 SAMD11Q96NU1 681 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 TLR10Q9BXR5 811 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 ABCB6Q9NP58 842 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 LZTS1Q9Y250 596 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 MTCH2Q9Y6C9 303 aa9.58□□□□□ -0.88
USP4-202ENST00000351842 FAM72CH0Y354 149 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 TADA3O75528 432 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 FBXO21O94952 628 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 EFEMP2O95967 443 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 PAX3P23760 479 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 NOS2P35228 1153 aa9.57□□□□□ -0.88
USP4-202ENST00000351842 MAGEA11P43364 429 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms