RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CHRNB2P17787 502 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 MMP8P22894 467 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ITIH4Q14624 930 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 RASGEF1CQ8N431 466 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 BLOC1S5Q8TDH9 187 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 HTR3CQ8WXA8 447 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 B3GNT5Q9BYG0 378 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 TRPV6Q9H1D0 765 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 STARD7Q9NQZ5 370 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 CHST12Q9NRB3 414 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 ATP11BQ9Y2G3 1177 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 MYPNQ86TC9 1320 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 SOWAHBA6NEL2 793 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 GSTA4O15217 222 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 DHX15O43143 795 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 MTSS1O43312 755 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 PQBP1O60828 265 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 ENDOD1O94919 500 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 PGK1P00558 417 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 USP17L7P0C7H9 530 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 MGAT1P26572 445 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 AQP5P55064 265 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 C4orf22Q6V702 233 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 TFAP2DQ7Z6R9 452 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ULK4Q96C45 1275 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 NSL1Q96IY1 281 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 CAMKK2Q96RR4 588 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 CPXM1Q96SM3 734 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 SNRNP25Q9BV90 132 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 YIPF3Q9GZM5 350 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 MTIF3Q9H2K0 278 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 MYH13Q9UKX3 1938 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 NUP188Q5SRE5 1749 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 RNF103O00237 685 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 POU6F1Q14863 301 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ZNF410Q86VK4 478 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ART4Q93070 314 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 TBCBQ99426 244 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 GOLGA2P5Q9HBQ8 144 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 FSCN1Q16658 493 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 ANKRD20A4Q4UJ75 823 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ANKRD20A8PQ5CZ79 823 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ANKRD20A2Q5SQ80 823 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ANKRD20A1Q5TYW2 823 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 OVOS1Q6IE37 1185 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ZCCHC23Q6ZST2 131 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 APOBEC3GQ9HC16 384 aaKnown RBP16.8■□□□□ 0.28
CUX1-213ENST00000549414 VCX3AQ9NNX9 186 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 ANLNQ9NQW6 1124 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 AGPSO00116 658 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 KIF3CO14782 793 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 SKAP2O75563 359 aaPredicted RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 F9P00740 461 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 MLH1P40692 756 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 PDAP1Q13442 181 aaKnown RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 PDCD2Q16342 344 aaPredicted RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 LAYNQ6UX15 382 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 MTMR14Q8NCE2 650 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 USP6NLQ92738 828 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 SENP8Q96LD8 212 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 MUC3BQ9H195 1237 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 NXF3Q9H4D5 531 aaKnown RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 NOCTQ9UK39 431 aaKnown RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 hCG_1818297A0A087WSY0 165 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 TMEM191CA6NGB0 347 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 BDNFP23560 247 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 RPA3P35244 121 aaPredicted RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 SCNN1GP51170 649 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 DRG2P55039 364 aaKnown RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 FAM182AQ5T1J6 154 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 C18orf25Q96B23 403 aaPredicted RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 TMEM237Q96Q45 408 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 CYP4F12Q9HCS2 524 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 ZNF536O15090 1300 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 IQSEC1Q6DN90 963 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 USP50Q70EL3 339 aaPredicted RBP16.79■□□□□ 0.28
CUX1-213ENST00000549414 PIGZQ86VD9 579 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 EXOC3L1Q86VI1 746 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 IFNEQ86WN2 208 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 TMEM169Q96HH4 297 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 LRRC40Q9H9A6 602 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 DNAJC16Q9Y2G8 782 aa16.79■□□□□ 0.28
CUX1-213ENST00000549414 PPARGP37231 505 aaPredicted RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 LHX1P48742 406 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 ALDH7A1P49419 539 aaKnown RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 ST6GALNAC4Q9H4F1 302 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 L3MBTL1Q9Y468 752 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 ADGRA3Q8IWK6 1321 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 SMIM10L2AP0DMW4 78 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 SMIM10L2BP0DMW5 78 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 HSPA8P11142 646 aaKnown RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 NNMTP40261 264 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 HADHAP40939 763 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 ZNF143P52747 638 aaPredicted RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 HSP90AA5PQ58FG0 334 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 PPP1R26Q5T8A7 1209 aaPredicted RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 LPPQ93052 612 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 FBXO32Q969P5 355 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms