RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 TXNRD3NBQ6F5E7 133 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 C1orf228Q6PIY5 440 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 FBXO46Q6PJ61 603 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 PAQR9Q6ZVX9 377 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ANKS3Q6ZW76 656 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 RTN4RL1Q86UN2 441 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 ZDHHC14Q8IZN3 488 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 CNPY4Q8N129 248 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ARFGAP1Q8N6T3 406 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SPPL2BQ8TCT7 592 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 C8orf48Q96LL4 319 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 KLC2Q9H0B6 622 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 BRD8Q9H0E9 1235 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ZCWPW1Q9H0M4 648 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ABCC13Q9NSE7 274 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TMEM39AQ9NV64 488 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 GPATCH2LQ9NWQ4 482 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SLC12A6Q9UHW9 1150 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 C3orf70A6NLC5 250 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 H3BQF6 201 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 EEF2KO00418 725 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 MTSS1O43312 755 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 CXCL10P02778 98 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 AMHP03971 560 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 NUDT17P0C025 328 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SLC2A3P11169 496 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 MX2P20592 715 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TLE2Q04725 743 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 NME3Q13232 169 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TAF5Q15542 800 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 OASLQ15646 514 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 SLC39A12Q504Y0 691 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 RAB41Q5JT25 222 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SPOUT1Q5T280 376 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 FAM171A1Q5VUB5 890 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ZCCHC9Q8N567 271 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 LINC01599Q8WXQ3 324 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ATP6V1G3Q96LB4 118 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PEBP4Q96S96 227 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SH3GL2Q99962 352 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 NEUROG2Q9H2A3 272 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 NRDE2Q9H7Z3 1164 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 OLA1Q9NTK5 396 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 DDIT4Q9NX09 232 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ABI2Q9NYB9 513 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 FZD10Q9ULW2 581 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ATP11BQ9Y2G3 1177 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TRIP11Q15643 1979 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 SYNJ2BP-COX16A0A087WUM0 186 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 BCLAF3A2AJT9 711 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 NCAM2O15394 837 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 RGS16O15492 202 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 NBNO60934 754 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 DDHD2O94830 711 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TSHRP16473 764 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ECHS1P30084 290 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PSEN1P49768 467 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TPI1P60174 286 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 BRMS1LQ5PSV4 323 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 VARS2Q5ST30 1063 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 ACBD5Q5T8D3 534 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 C1orf53Q5VUE5 145 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 SLC9A4Q6AI14 798 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 KIAA1841Q6NSI8 718 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 FUT10Q6P4F1 479 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 LEKR1Q6ZMV7 388 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TADA2BQ86TJ2 420 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 FAM131BQ86XD5 332 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 CEP57Q86XR8 500 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PDIK1LQ8N165 341 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 KHSRPQ92945 711 aaKnown RBP eCLIP6.26□□□□□ -1.418e-7■■■□□ 18.8
VPS50-205ENST00000441602 FAF2Q96CS3 445 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PGAP3Q96FM1 320 aaPredicted RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 PIWIL1Q96J94 861 aaKnown RBP6.26□□□□□ -1.41
VPS50-205ENST00000441602 CEP295NLQ96MC4 621 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 HERPUD2Q9BSE4 406 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 TMEM106CQ9BVX2 250 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PPP1R12CQ9BZL4 782 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 PSD3Q9NYI0 1048 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS50-205ENST00000441602 COX16Q9P0S2 106 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 BCCIPQ9P287 314 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS50-205ENST00000441602 CACNG4Q9UBN1 327 aa6.26□□□□□ -1.41
VPS50-205ENST00000441602 ABHD14A-ACY1A0A1B0GW23 586 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 NRP1O14786 923 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 USP17L7P0C7H9 530 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 KLRC2P26717 231 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 L1CAMP32004 1257 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 HCAR3P49019 387 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 LMAN1P49257 510 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 ALDH7A1P49419 539 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 AFF1P51825 1210 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 STAT4Q14765 748 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 MTFR1Q15390 333 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TRADDQ15628 312 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 DNAJC21Q5F1R6 531 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 HEATR6Q6AI08 1181 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 TRNP1Q6NT89 227 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 HIBCHQ6NVY1 386 aaPredicted RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms