RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 RGS9BPQ6ZS82 235 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 PYROXD2Q8N2H3 581 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 BANPQ8N9N5 519 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 ANKRD52Q8NB46 1076 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 IKBKGQ9Y6K9 419 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 RALGAPA2Q2PPJ7 1873 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 SMIM35A0A1B0GVV1 85 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 BCAT1P54687 386 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 SNX17Q15036 470 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 FAM110CQ1W6H9 321 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 OLFML2BQ68BL8 750 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 CAND1Q86VP6 1230 aaKnown RBP20.1■□□□□ 0.81
COL9A3-201ENST00000343916 NETO2Q8NC67 525 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 STK32AQ8WU08 396 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 KLHL29Q96CT2 875 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 RTP4Q96DX8 246 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 C11orf84Q9BUA3 381 aaPredicted RBP20.1■□□□□ 0.81
COL9A3-201ENST00000343916 MTMR10Q9NXD2 777 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 FLRT1Q9NZU1 646 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 AP4E1Q9UPM8 1137 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 GNEQ9Y223 722 aaKnown RBP20.1■□□□□ 0.81
COL9A3-201ENST00000343916 BCLAF3A2AJT9 711 aaKnown RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 MBLAC1A4D2B0 266 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 DESP17661 470 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 TKTP29401 623 aaKnown RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 SLC26A9Q7LBE3 791 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 OTOAQ7RTW8 1153 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 TLK2Q86UE8 772 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 SLC44A1Q8WWI5 657 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 MYLK2Q9H1R3 596 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 CPA4Q9UI42 421 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 F5H423 210 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 METTL18O95568 372 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 MT-ND3P03897 115 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 INHBAP08476 426 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 IGFBP6P24592 240 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 MFSD10Q14728 455 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 DPYSL2Q16555 572 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 ZDHHC17Q8IUH5 632 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 CTAGE3PQ8IX95 158 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 ZNF276Q8N554 614 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 ARRDC4Q8NCT1 418 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 USP6NLQ92738 828 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 N4BP2L2Q92802 583 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 ERP27Q96DN0 273 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 PARK7Q99497 189 aaKnown RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 KLC2Q9H0B6 622 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 SSU72Q9NP77 194 aaKnown RBP20.09■□□□□ 0.81
COL9A3-201ENST00000343916 BAIAP2L1Q9UHR4 511 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 CHKBQ9Y259 395 aa20.09■□□□□ 0.81
COL9A3-201ENST00000343916 IQCA1LA6NCM1 817 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 NQO1P15559 274 aaKnown RBP20.08■□□□□ 0.81
COL9A3-201ENST00000343916 PTPN9P43378 593 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 BEX3Q00994 111 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 FAM131BQ86XD5 332 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 APPL2Q8NEU8 664 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 KCTD15Q96SI1 283 aaPredicted RBP20.08■□□□□ 0.81
COL9A3-201ENST00000343916 SNX25Q9H3E2 840 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 PLAC1Q9HBJ0 212 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 CACNG4Q9UBN1 327 aa20.08■□□□□ 0.81
COL9A3-201ENST00000343916 ZC3H7BQ9UGR2 993 aaKnown RBP20.08■□□□□ 0.81
COL9A3-201ENST00000343916 CFAP73A6NFT4 308 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 CXorf49A8MYA2 514 aaPredicted RBP20.08■□□□□ 0.8
COL9A3-201ENST00000343916 LPXNO60711 386 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 SNX16P57768 344 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 CRYBG2Q8N1P7 616 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 PPM1NQ8N819 430 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 CENPIQ92674 756 aaPredicted RBP20.08■□□□□ 0.8
COL9A3-201ENST00000343916 PTPRN2Q92932 1015 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 TBC1D31Q96DN5 1066 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 POPDC2Q9HBU9 364 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 TMPRSS4Q9NRS4 437 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 TTLL3Q9Y4R7 772 aa20.08■□□□□ 0.8
COL9A3-201ENST00000343916 BRCA2P51587 3418 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 SCN4AP35499 1836 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 IQANK1A0A1B0GTG1 560 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 CFAP69A5D8W1 941 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 ATP6V1G2O95670 118 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 C1QAP02745 245 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 PYGBP11216 843 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 TSHRP16473 764 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 GOT1P17174 413 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 AMPD1P23109 780 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 ELF1P32519 619 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 GRIA1P42261 906 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 PITX1P78337 314 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-201ENST00000343916 OVGP1Q12889 678 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 KCNT2Q6UVM3 1135 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 FAM149B1Q96BN6 582 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 CSPG4P5Q96PW8 444 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 NPHS2Q9NP85 383 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 SYNJ2BP-COX16A0A087WUM0 186 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 CLDN5O00501 218 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 CD4P01730 458 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 KRT16P08779 473 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 ACAT1P24752 427 aaKnown RBP20.07■□□□□ 0.8
COL9A3-201ENST00000343916 CDC42EP1Q00587 391 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 UBXN11Q5T124 520 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 FAM111AQ96PZ2 611 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 COX16Q9P0S2 106 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms